Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18p01f
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 4.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 5.3
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 9.2
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.2
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.2
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 25 9.2
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 9.2
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 182 HVPKTNRPS*TSLPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMG 316
H P+++R + S L+ E+K P + + L Q F +G
Sbjct: 17 HSPESSRETRFSAQQLLDELKDSYSSPSVAIQLLELNEQAFSSLG 61
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/47 (19%), Positives = 28/47 (59%)
Frame = +2
Query: 443 KNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMM 583
+N+++ + +++++ L ++ Q+ ++HH KK++ M V ++
Sbjct: 1224 ENNELNSGCELLVQETLDKKSYSRTGQLGFIHHLKKKDQNMEKVPVL 1270
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.3
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Frame = +2
Query: 218 LPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQI--LVAPMMSHQNRH 391
L + I +KQ K + + + L NQQ +Q+ L KKL ++ + H
Sbjct: 253 LQAEIAVLKQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETH 312
Query: 392 LSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQY 532
+ + L+N + K +T +K L+ KQI++
Sbjct: 313 CATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRE-LSVLKQIEF 358
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 464 TVMMMLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMMNLRKRFHKNQLLH 622
T + L +NL S +NQ +HHKK++ ++ ++ + K + L+
Sbjct: 418 TSFISLDKNLSSKFVNQITPDNRLHHKKQKRSPISQLLFSRWLEETEKRRSLN 470
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 383 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 466
N+H+ P+K N L +L +K MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 478 VTSKPKKQPVKPIKTNP 528
V S+PK P KP++T P
Sbjct: 298 VQSRPKNYPQKPVQTTP 314
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Frame = +2
Query: 359 VAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMM-LR-QNLKSSLLNQ*KQIQ- 529
V+P S + P +QL + + N + T++ +R Q+LK I+
Sbjct: 153 VSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRA 212
Query: 530 -YVHHKKKRNHQMTIVVMMNLRKRFHKNQLLHLPNF 634
+++ R+ + IVVM ++++ H Q+LH +F
Sbjct: 213 DIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 317 KFQQLRKKLKV-QILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNL 493
K +L++++++ + H + LSP++ ++++ RNK+ + AT LRQ L
Sbjct: 72 KSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPELRQAL 131
Query: 494 KS 499
+S
Sbjct: 132 RS 133
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = +1
Query: 376 PPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPPQ 543
PP+ N V + + +Q T++P K P+ T P PPQ
Sbjct: 50 PPQDIPLVNSDVPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPPQ 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.125 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,416
Number of Sequences: 5004
Number of extensions: 41651
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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