Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p01f
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993...    30   1.8  
01_01_0070 - 542603-542686,542803-543441                               28   7.2  

>12_02_0554 +
           20351660-20352299,20398588-20398907,20399120-20399344,
           20399375-20399818
          Length = 542

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +2

Query: 188 PKTNR-PS*TSLPSLIKEIKQKL--KVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQIL 358
           P+ NR PS     +   E+ QK+   VP+  A ++P   +  K +   ++     + +  
Sbjct: 265 PQRNRKPSVGEQFACFVEVIQKIHINVPLLDAMQVPTHARYLKDILNNKRPLPTTEGRSW 324

Query: 359 VAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLR 484
           +   + H +  +  TKQ  N+ LH+L  K   +  T+   +R
Sbjct: 325 LQMNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCPTISCSIR 366


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +1

Query: 376 PPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPP 540
           PP  A+    A     + PAK                 PKK P  P+   PV PP
Sbjct: 49  PPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.125    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,379
Number of Sequences: 37544
Number of extensions: 238184
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)