Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p01f
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    36   0.025
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    31   1.2  
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    30   2.1  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   2.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   2.8  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   4.9  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +2

Query: 212 TSLPSLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQ 352
           TSL +L+K++  K+  P+ + +K+P   + FK++ KF +LRK L  Q
Sbjct: 205 TSLLNLLKDV-DKMSEPLEQLQKLPSVFEPFKEVSKFMRLRKTLPHQ 250


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 224 SLIKEIKQKLKVPVTRAKKMPLRNQQFKQMGKF--QQLRKKLKVQILVAPMMSHQNRHLS 397
           S  KE+ + L+  +T A+   +  Q     GK+    LRK L +  L   ++ H+   L+
Sbjct: 99  SSCKEVSENLQFCITCAQSQDILKQPSNN-GKWIAVPLRKDLSIICLSCGVLEHKEHELA 157

Query: 398 PTKQLKNL 421
           P   L+NL
Sbjct: 158 PIDMLENL 165


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 379 PKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVK 510
           PK AS+P  A+  L++TPAKK E             K +++PVK
Sbjct: 39  PKPASQP--ALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVK 80


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/109 (20%), Positives = 34/109 (31%)
 Frame = +1

Query: 328  TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 507
            TKK+            P K+ S P +       +P KK++            +K +K P 
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712

Query: 508  KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNS 654
            K +      P +                   P+KS     K P K+  S
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKS 1761


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/109 (20%), Positives = 34/109 (31%)
 Frame = +1

Query: 328  TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 507
            TKK+            P K+ S P +       +P KK++            +K +K P 
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712

Query: 508  KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNS 654
            K +      P +                   P+KS     K P K+  S
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKS 1761


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/109 (20%), Positives = 34/109 (31%)
 Frame = +1

Query: 328  TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 507
            TKK+            P K+ S P +       +P KK++            +K +K P 
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712

Query: 508  KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNS 654
            K +      P +                   P+KS     K P K+  S
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKS 1761


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/109 (20%), Positives = 34/109 (31%)
 Frame = +1

Query: 328  TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 507
            TKK+            P K+ S P +       +P KK++            +K +K P 
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712

Query: 508  KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNS 654
            K +      P +                   P+KS     K P K+  S
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKS 1761


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
 Frame = +2

Query: 236  EIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQILVAPMMSHQNRHLSPTKQLK 415
            + K++    +      PL   Q  Q  +     ++ + Q  VA  +    R L P  QL 
Sbjct: 955  DAKRRSSEGLVAVTSTPLPPIQLPQRSQAPAPSRQQQQQPPVAYQVQFNGRPLPPM-QLP 1013

Query: 416  NLTLHQLRNKNHQMTATVMM---MLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMMN 586
             L     + + HQM     M    ++Q  +   + Q + +Q  HH ++++HQ        
Sbjct: 1014 PLQNPHNQQQQHQMLHQSQMNYQQVQQVQQVQHVQQQQNLQNQHHHQQQHHQQNQQQAPG 1073

Query: 587  LRKRFHKN 610
             R R H N
Sbjct: 1074 NRSRSHSN 1081


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 49  ILDKNFKMNLTTEIQADVNSLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQ 198
           I + NF+  ++ E  + +   +HQ  EK+ +    TF + T+  P  +N+
Sbjct: 269 IEEDNFESTISIEKCSKLGIFLHQNAEKLARCQVDTFQRITRDLPPFRNK 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.309    0.125    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,372,790
Number of Sequences: 27780
Number of extensions: 238013
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)