Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o23f
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   1.3  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   7.2  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 283 NTGNQCTYTHFLTSDFFHGKTYNKAVEGHINKLTKS 176
           NTGN    T  +  DFF+GK  +K V     K+T++
Sbjct: 352 NTGNTFE-TKPVKQDFFYGKVSDKGVSSSKKKITET 386


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 284 EYWKSMYV--HTFFNVGFFSWENLQQSRRGTYK*INKILLRTIVVL 153
           E+++S+ V  H  F  GF +WE     R   +  I   L R + VL
Sbjct: 28  EFYQSLEVAHHFIFRYGFLTWEWTSAIRSALHPLIFAALYRVLQVL 73


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 217 CKFSHEKNP--TLKNVCTYIDFQYSISSVRTQR 309
           CK  +  N   +LKNVC YI+   +  S R+++
Sbjct: 511 CKDQYSSNQFSSLKNVCQYIEHHINSLSRRSKK 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,119
Number of Sequences: 5004
Number of extensions: 31990
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)