Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o23f
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical ...    31   0.52 
AF047653-5|AAT92057.1|  117|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln (neur...    27   8.4  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    27   8.4  
AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.    27   8.4  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    27   8.4  

>AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.6 protein.
          Length = 439

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 429 F*YFIKISQQNFNI-ICFQKRYLHGSVLCLQTKGSFVRT-DLTLRSDARNRILEI 271
           F  F KIS +N N      K+ +   +L LQTKG FVR  D T+RSD  N  ++I
Sbjct: 279 FQIFPKISTKNPNFPFQIDKKSVMKCLLALQTKG-FVRLFDTTVRSDNINHQIQI 332


>AF047653-5|AAT92057.1|  117|Caenorhabditis elegans Hypothetical
           protein W02F12.4c protein.
          Length = 117

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 232 HGKTYNKAVEGHINKLTKSCYEQSWFY 152
           H + +NKA E H N L   C E S+F+
Sbjct: 92  HARAFNKAEE-HYNVLNNLCIESSFFF 117


>Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical
           protein C34B4.4 protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 193 NKLTKSCYEQSWFYSTIYLFIRKYNTNCH 107
           N  T++CY  S      Y+F R   TNC+
Sbjct: 105 NFYTEACYNVSMHQEHFYVFCRCSQTNCN 133


>U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.2
           protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 299 LTLEIEYWKSMYVHTFFNVGFFSWENLQQSRRGTYK*INKILLRTIVVLFYNL 141
           +T+  +Y KS+ V   FN GFF+   +       Y  +  IL+  +V+LF  L
Sbjct: 334 VTIPTQYLKSLAVLQIFNAGFFTITAI-------YSFLPHILIAFLVILFEGL 379


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 154  KTTIVRNKILLIYLYVPLRLCCKFSHEKNPTLK----NVCTYIDFQYSISSVRTQRQIRS 321
            K TI +NK+L + L   ++ C   + E  P+L+    NV TY++ + S+    T R +  
Sbjct: 869  KPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVDQMT-RMMEQ 927

Query: 322  YERAL 336
            Y   L
Sbjct: 928  YANNL 932


>AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 299 LTLEIEYWKSMYVHTFFNVGFFSWENLQQSRRGTYK*INKILLRTIVVLFYNL 141
           +T+  +Y KS+ V   FN GFF+   +       Y  +  IL+  +V+LF  L
Sbjct: 334 VTIPTQYLKSLAVLQIFNAGFFTITAI-------YSFLPHILIAFLVILFEGL 379


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1152

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 154  KTTIVRNKILLIYLYVPLRLCCKFSHEKNPTLK----NVCTYIDFQYSISSVRTQRQIRS 321
            K TI +NK+L + L   ++ C   + E  P+L+    NV TY++ + S+    T R +  
Sbjct: 815  KPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVDQMT-RMMEQ 873

Query: 322  YERAL 336
            Y   L
Sbjct: 874  YANNL 878


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,454
Number of Sequences: 27780
Number of extensions: 172754
Number of successful extensions: 426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)