Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o18r
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    29   0.032
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    29   0.032
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    29   0.032
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   4.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 0.032
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 105 YSITSAGPPFRKTGKSLSLWKSS 173
           Y +T  GPP  +TG +L +W+++
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAA 37


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 0.032
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 105 YSITSAGPPFRKTGKSLSLWKSS 173
           Y +T  GPP  +TG +L +W+++
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAA 37


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 0.032
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 105 YSITSAGPPFRKTGKSLSLWKSS 173
           Y +T  GPP  +TG +L +W+++
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAA 37


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 259 ACAAPGKRNLMPGTNTPYPPVP 194
           A  +P    L P    P PP+P
Sbjct: 400 AVRSPAGGQLPPSAGAPMPPIP 421


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 247 PGKRNLMPGTNTPYPP 200
           PG R ++P  N  +PP
Sbjct: 49  PGLRQVLPNGNLVFPP 64


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 133 LGRRASHCLSGRALVFYEYFRELVDK 210
           LG+   HC  G  +     F++L DK
Sbjct: 67  LGKAGGHCEKGVCICRKTSFKDLWDK 92


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 181 YEYFRELVDKECS-SQASDS 237
           Y+Y RE+++KE   S A DS
Sbjct: 321 YKYIREIMNKESRISAAIDS 340


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 181 YEYFRELVDKECS-SQASDS 237
           Y+Y RE+++KE   S A DS
Sbjct: 321 YKYIREIMNKESRISAAIDS 340


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 147 KSLSLWKSSCFLRIF 191
           K++ +W SSC + +F
Sbjct: 274 KAIDVWMSSCSVFVF 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,344
Number of Sequences: 438
Number of extensions: 3360
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)