Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18o12r
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 49 6e-07
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 40 2e-04
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 33 0.042
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 29 0.52
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 28 0.90
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 2.1
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 2.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 3.6
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 4.8
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.3
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 8.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 8.4
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 48.8 bits (111), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = -2
Query: 396 CGTCR-SDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTI-GVKQAVE------N 241
C C S+ KYKCP C PYCS+ C+K+H Q+ C T GVK+ + N
Sbjct: 4 CSICNESEIKYKCPKCSFPYCSLPCWKIH-QSQCETVNDNNTTTFKGVKEPLNPPEPSPN 62
Query: 240 LYPTEDTVPLHRLNLLENSTEVKKCLENPHVREILE 133
+ +P L + + ++ +E+P ++ ++E
Sbjct: 63 VIYVNGRIPSLAEEALPSESLLESIVEDPSIKNLIE 98
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 453 DSKYTNCPIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIK 292
+S+Y C K C C KY C C YCS C +H + C+K
Sbjct: 83 NSRYNTCVAKPSYKPPRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSETRCMK 136
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 32.7 bits (71), Expect = 0.042
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 396 CGTCRSDP-KYKCPTCMVPYCSVACYKLHKQ 307
C TC+ + KY+CP C +C + C HK+
Sbjct: 9 CSTCQKNASKYRCPRCDSRFCCLECNLEHKR 39
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 29.1 bits (62), Expect = 0.52
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = -2
Query: 309 QNPCIKPPSPPKQTIGVKQ--AVENLYPTED--TVPLHRLNLLENSTEVKKCLENPHVRE 142
Q PC PP+P + + K+ +V Y E+ T+ + +L+ L S + C +P+ E
Sbjct: 174 QRPCETPPTPSIEALKRKELSSVTLTYDDEEKKTIKILQLSDLHYSNSDRPC-RDPYPYE 232
Query: 141 ILELLDSSANPDELVQEYMQ--EPIF 70
E + A V E +Q EP F
Sbjct: 233 TAEDCMADAKTTAFVNELLQLEEPDF 258
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = -2
Query: 237 YPTEDTVPLHRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQEPIFTE 64
+ E+T+ L + + TEV+ + +PH+++ E++ S A +QE+ Q F E
Sbjct: 1069 FSCEETIALLSAFVFDEKTEVEPTI-SPHLQKGKEMILSVAEKVNQIQEHYQVLYFNE 1125
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 216 PLHRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQE 91
P N+++ TE+K P +R +ELL S + D L+ E
Sbjct: 330 PTEDRNVIDVKTEIKIRDFTPTLRSAIELLTSGTHADRLLSE 371
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 180 EVKKCLENPHVREILELLDSSANPDELV 97
E K +E+ V EILEL++ S NP LV
Sbjct: 195 ENNKEIEHEVVSEILELIEKSKNPSILV 222
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 55 INKFCEYGFLHIFLN*LIRICRRIK 129
INKF + +FL L+R+CR++K
Sbjct: 17 INKFSSFESNWLFLLFLVRVCRQLK 41
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 222 TVPLHRLNLLENSTEVKKCL-ENPHVREILELLDSSANPDELVQ 94
TV ++LN+L NS KCL + P +D ++N ++LVQ
Sbjct: 930 TVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQ 973
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 347 TMHVGHLYLGSDLQVPQFISEWVGW 421
T+ +GH G Q+PQF+ E GW
Sbjct: 44 TIVLGHTGCGKTTQIPQFLYE-AGW 67
>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 189 NSTEVKKCLE---NPHVREILELLDSSANPDELVQEYMQEPI 73
++TEV K + N +RE+LEL++S A+ D + +Y E +
Sbjct: 42 STTEVLKAQKAGYNQALREVLELIESGASID-FISQYCLEKL 82
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 294 KPPSPPKQTIGVKQAVENLYPT 229
KPPSP + I +VEN Y T
Sbjct: 187 KPPSPEVEKIETSTSVENAYIT 208
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 300 CIKPPSPPKQTIGVKQAVENLYPTEDTV 217
CI SPP G+K L PT +TV
Sbjct: 456 CITQSSPPCNISGIKPGSLKLSPTTNTV 483
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 168 CLENPHVREILELLDSSANPDELVQEYMQEPI 73
C +P ++ LEL + + P ELV + EPI
Sbjct: 186 CGYHPRLKVALELPPACSPPIELVNRWYAEPI 217
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 486 NIFLAYFLSVTYLFRLFGIF 545
+IFLA+F+ +T++F F +F
Sbjct: 710 SIFLAWFIGITFMFE-FAVF 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,722
Number of Sequences: 5004
Number of extensions: 51790
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -