Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o12r
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.035
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = -2

Query: 441 TNCPI-KFQPTHSEMNCGTCRSDPK---YKCPTCMVPYCSVACYKLHKQNPCIKPPSPPK 274
           T CPI KF+      +C  C +  K   Y    C          K  K+ PC +PPS P+
Sbjct: 263 TECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQ 322


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -3

Query: 482 KITINSLN*VTVSTQIALSSSNLPIPK*IVELVDQILNI 366
           ++T+   + +T+STQ A S ++LP P   ++ VD  +++
Sbjct: 276 RVTLGVTSLLTLSTQHAKSQASLP-PVSYLKAVDAFMSV 313


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 444 YTNCPIKFQPTHSEMNCGTCRSDPKY 367
           Y NC I++         GT +  P Y
Sbjct: 530 YWNCVIQYNTRAENHQTGTAKMGPSY 555


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 221 VSSVGYKFSTACFTPIVCFGGDGGL 295
           +  +GY  ++  F PI  + GD  L
Sbjct: 178 IKKIGYNTASVAFVPISGWHGDNML 202


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 126  DSSANPDELVQEYMQE 79
            +SS NPD+   EY+ E
Sbjct: 968  ESSCNPDQKPTEYLLE 983


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 249 VENLYPTEDTVPLH 208
           VE   P  DTVP+H
Sbjct: 527 VEEWNPLTDTVPIH 540


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 549 HKIYRITEINM*HLKNRLKIYYENNYK 469
           HKI      N  +  N  K  Y NNYK
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 549 HKIYRITEINM*HLKNRLKIYYENNYK 469
           HKI      N  +  N  K  Y NNYK
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,432
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)