Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o08r
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.60 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   4.2  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   7.4  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   7.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.7  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   9.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 393  TLSDTINTIALPSGQELQEN-FVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVC 217
            TL +   T+A  S   LQ+N  +      + FGL+SS+  +     L HV+  + N+   
Sbjct: 933  TLVNKKETLAQDSESLLQKNNALNEKGFENQFGLSSSAAKVLNKDTLDHVSGPISNSVSS 992

Query: 216  TF 211
            +F
Sbjct: 993  SF 994


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 154 RHLPW*LRWPSCCYKKQPSYLDWYYIIWLWSRL 56
           RHL   + W SC YK    Y  W++ +  +SR+
Sbjct: 309 RHLSD-VEWKSCFYKSYYEYRSWFHNVTNFSRI 340


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 454  RMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVSGNKRSSA 612
            R H  R+ LNS       HG+++ + A  +   I P ++  +    GN+ S+A
Sbjct: 2607 RNHSTRSSLNSPRQFWAYHGSRSKKIADIVKRHIPPTINGKRSKNKGNEGSNA 2659


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 599 SEAPQTPVRGCPLTTMVISRPP**GNCPRVAGEPPTILVLLSPASSALRILSASGTP 769
           S+    P   CP+  + I  PP   +    +G PP+     +PA+ A    SA+  P
Sbjct: 30  SDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAP 86


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 213 FAFPFVLQSSNLCTSGRG 160
           F +PFVL+S  L   GRG
Sbjct: 137 FGYPFVLKSKTLAYDGRG 154


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   IHERCNSGICGRQVHLATETRAK*CNTNQDRTVV 108
           +HER  S I   ++ +  +   K CNTN+   ++
Sbjct: 220 LHERLRSSISRERIGVEVDKMLKHCNTNRALKII 253


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 798 NPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPA 688
           NP  GY   YG P ++     +     N  ++  SPA
Sbjct: 95  NPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPA 131


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 378 INTIALPSGQELQENFVGSSAVASGFGLTSSS-----GSITTNQVLSHVNLDVI 232
           INT ALP   +    F G + +A GFG+ +S      GS++   V+    +D+I
Sbjct: 192 INT-ALPQLCQRVRKFAGDTPLAVGFGVNTSEHFHQVGSVSDGVVVGSKIIDLI 244


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 387  SDTINTIALPSGQELQENFVGSSAVASG---FGLTSSSGSITTNQVLS 253
            S  +++++L S          SSA ++G   F LTS +GS++++ ++S
Sbjct: 3502 SSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSLTSENGSVSSSSLVS 3549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,306
Number of Sequences: 5004
Number of extensions: 73815
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)