Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o08f
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    29   0.86 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.0  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 427 PNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGS 606
           P  S ++I  +     LPSPV+   T  T + P G   Q    GSS VA  + +   + +
Sbjct: 228 PQVSSSSITTNATYQNLPSPVS---TSTTSSQPYGAFHQPATTGSSFVADKWKMPMFTSN 284

Query: 607 ITTNQVLSHVKP 642
           +T+ Q  +   P
Sbjct: 285 VTSAQPSARASP 296


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
 Frame = +1

Query: 406  TSSIVMHPNW--SPATIRNDVAVIYLPSPVTLSDTI-NTIALPSGQELQENFVGSSAVAS 576
            TSS V++ +   S +T+     VI   S ++ + +I ++++L S          SSA ++
Sbjct: 3469 TSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFST 3528

Query: 577  G---FGLTSSSGSITTNQVLS 630
            G   F LTS +GS++++ ++S
Sbjct: 3529 GSSSFSLTSENGSVSSSSLVS 3549


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 429  RMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVSGNKRSSA 271
            R H  R+ LNS       HG+++ + A  +   I P ++  +    GN+ S+A
Sbjct: 2607 RNHSTRSSLNSPRQFWAYHGSRSKKIADIVKRHIPPTINGKRSKNKGNEGSNA 2659


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 490  TLSDTINTIALPSGQELQEN-FVGSSAVASGFGLTSSSGSITTNQVLSHV 636
            TL +   T+A  S   LQ+N  +      + FGL+SS+  +     L HV
Sbjct: 933  TLVNKKETLAQDSESLLQKNNALNEKGFENQFGLSSSAAKVLNKDTLDHV 982


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 284 SEAPQTPVRGCPLTTMVISRPP**GNCPRVAGEPPTILVLLSPASSALRILSASGTP 114
           S+    P   CP+  + I  PP   +    +G PP+     +PA+ A    SA+  P
Sbjct: 30  SDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAP 86


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 85  NPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPA 195
           NP  GY   YG P ++     +     N  ++  SPA
Sbjct: 95  NPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPA 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,701
Number of Sequences: 5004
Number of extensions: 61939
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)