Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18o08f
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 44 8e-05
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 40 0.002
AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin prot... 33 0.26
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 31 1.1
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 29 3.2
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 28 5.7
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 5.7
Z83237-6|CAE17879.1| 549|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 27 9.9
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +1
Query: 172 RIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCWFDGTNQXXX 351
R++GGS ++ +P+ LL + G R CG SL+ N +LTAAHC+ ++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRL---GHHR---CGGSLIDPNFVLTAAHCF--AKDRRPT 108
Query: 352 XXXXXXXXXXFSGGTRVETSSIVMHPNWSPATIRN-DVAVIYLPSPVTLSDTINTIALPS 528
G+ +++ +HP ++ + D A++ + PV S T I LPS
Sbjct: 109 SYSVRVGGHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPS 168
Query: 529 GQELQENFVGSSAVASGFGLTSSSGSIT 612
++ V +G+G T S++
Sbjct: 169 LPAVENRL----CVVTGWGSTIEGSSLS 192
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 4/151 (2%)
Frame = +1
Query: 145 AEEAGLSN-TRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHC 321
A +A S R+VGG G FP+ L N + CGAS++ L+TAAHC
Sbjct: 16 ARDAAKSRIARVVGGFETVPGAFPWTAALR-----NKATKAHHCGASILDKTHLITAAHC 70
Query: 322 WFDGTNQXXXXXXXXXXXXXFSGGTR--VETSSIVMHPNWSPATIRNDVAVIYLPSP-VT 492
+ + + G I +P + +D+A++ +P P +
Sbjct: 71 FEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIE 129
Query: 493 LSDTINTIALPSGQELQENFVGSSAVASGFG 585
++ I LPS + G V SG+G
Sbjct: 130 FNEYAQPICLPSKDFVYT--PGRQCVVSGWG 158
>AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin protein
21 protein.
Length = 481
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 41 YWWLTAVLLHCLCMKIRYTVTLLSMVYQKQRGFARLKRQD 160
YWW V LC I YT+ LL Y++ + ++ +D
Sbjct: 291 YWWFLLVSFISLCSAIHYTIILLVPQYRRHEFKSMIRTED 330
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 268 VCGASLVTTNRLLTAAHCW 324
+CG +L+T +LTAAHC+
Sbjct: 61 ICGGTLITLKHVLTAAHCF 79
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 262 TGVCGASLVTTNRLLTAAHCWFDG 333
T VCG L+ + ++T+AHC F G
Sbjct: 43 TNVCGGVLIAPSIVITSAHCVFSG 66
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +1
Query: 391 GTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAV 570
G R ++ PN + D V P+P + T + G E V +
Sbjct: 187 GNRSTIMILLQKPNTMKEKEKEDQKVSNNPAPAASASTEGATTVTEGTTAAETTVATETT 246
Query: 571 ASGFGLTSSSGSITT 615
A+G G T ++ + T
Sbjct: 247 ATGTGTTEAAATTVT 261
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 389 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 219
P S T P T L+ ++PS A ++L +S + P R P TT + PP
Sbjct: 303 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 358
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 389 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 219
P S T P T L+ ++PS A ++L +S + P R P TT + PP
Sbjct: 483 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 538
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -1
Query: 471 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 292
+DG + NG ++P+ + ++ AE + +D A+ L +PA + Q +
Sbjct: 87 DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146
Query: 291 GNKRSSAD 268
+ S +D
Sbjct: 147 SSSDSDSD 154
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -1
Query: 471 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 292
+DG + NG ++P+ + ++ AE + +D A+ L +PA + Q +
Sbjct: 87 DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146
Query: 291 GNKRSSAD 268
+ S +D
Sbjct: 147 SSSDSDSD 154
>Z83237-6|CAE17879.1| 549|Caenorhabditis elegans Hypothetical
protein R06B9.6 protein.
Length = 549
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 437 LLLPFVMMWPSFTYPVPLLCLIQSIR 514
++L F + W S TY +P L LI +R
Sbjct: 285 VILDFPIEWISLTYRIPFLLLISDLR 310
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 TVMMKTF-VATCLLLVAYGSAFTLPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNT 171
T+ M F + + +LLV SA +L +NP+ + E IR A++A L++T
Sbjct: 23 TIAMGIFPIISLILLVFISSADSLQFRDNPLNSVDSSLKPYERHLIRAAKDAPLNST 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,471
Number of Sequences: 27780
Number of extensions: 358848
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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