Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18o05f
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    57   1e-08
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    54   8e-08
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    37   0.017
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   7.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 6/201 (2%)
 Frame = +1

Query: 133 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC--TGLRVT---I 297
           +R+V G+E   G FP+  ++R  +T    + CGA+I+     +TAAHC     RV+   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRNKATKA--HHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 298 IVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRK-IEFNDYIQPIRL 474
           +V     N T      E   Y+    +      +  HDI +++     IEFN+Y QPI L
Sbjct: 83  VVGDWDNNQTDGN---EQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 475 QRSADKNRNYDNVRLVAXXXXXXXXXXXXPENLNWVFLNGISNLRCMVAYNFSPTIQPST 654
                K+  Y   R                E L    +  I+   C+ +     ++  S 
Sbjct: 140 P---SKDFVYTPGRQCVVSGWGSMGLRYA-ERLQAALIPIINRFDCVNSSQIYSSMSRSA 195

Query: 655 ICTLGYNDTTQSTCQGDSGGP 717
            C  GY +    +CQGDSGGP
Sbjct: 196 FCA-GYLEGGIDSCQGDSGGP 215


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 5/200 (2%)
 Frame = +1

Query: 136 RIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGLR---VTIIVR 306
           R++ G E+S   +P+  +++++S +G  + CG ++I  N+ LTAAHC        +  VR
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113

Query: 307 AGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYIQPIRLQR-S 483
            G  + +  G     T    HP Y  N+     +D  ++     +  +   +PI L    
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWY--NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP 170

Query: 484 ADKNRNYDNVRLVAXXXXXXXXXXXXPENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTIC 660
           A +NR    + +V                L  + +  +S L C    N+   I  PS +C
Sbjct: 171 AVENR----LCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLC 226

Query: 661 TLGYNDTTQSTCQGDSGGPL 720
             GY+     +CQGDSGGPL
Sbjct: 227 A-GYSYGKIDSCQGDSGGPL 245


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 13/180 (7%)
 Frame = +1

Query: 226 CGATIIHSNWGLTAAHCT---GLRVTIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNV 396
           CGAT+I   W +TAAHC      R  + VR    N  R    F   +   H  Y+   N 
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERS---FSVKEAYIHSGYN---NQ 119

Query: 397 VQPHDIGLIDFGRKIEFNDYIQPIRLQRSADK-NRNYDNVRLVAXXXXXXXXXXXXPENL 573
              +DI L+     +     I+P+ L     K  + Y N  ++             P+ +
Sbjct: 120 TADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLI 178

Query: 574 NWVFLNG-----ISNLRCMVAYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTV 726
           N   L       IS+  C+  + F    S  I    IC   Y      T  GDSGGPL +
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLI 235


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 175 PYQLSIRMVSTVGGVNA-CGATIIHSNWGLTAAHC 276
           P+ + IR+ +  G     CG T+I     LTAAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,428
Number of Sequences: 27780
Number of extensions: 361002
Number of successful extensions: 1114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)