Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n23f
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    29   3.5  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    29   3.5  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    29   4.6  
M98552-7|AAK82925.2|  355|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   6.0  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    28   8.0  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    28   8.0  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    28   8.0  

>U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical
           protein W03A5.5 protein.
          Length = 189

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 718 YISYSCS-PGWTRRPLTKKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSR 542
           Y+  SC+  G+T+ P  K  + PIA        P P V   ST   SFV  RS +FSQ +
Sbjct: 109 YLRISCALNGYTKSP-NKSDLTPIA--------PHPPV---STMGESFVERRSRMFSQPQ 156

Query: 541 AEGSRPVILATLP 503
                P   + LP
Sbjct: 157 QRNPAPGFSSPLP 169


>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 483 VTGRNLE 503
           V G  LE
Sbjct: 319 VFGALLE 325


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 483 VTGRNLE 503
           V G  LE
Sbjct: 319 VFGALLE 325


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
 Frame = +3

Query: 75   NGDAIQN-LERFGSLNKYYYYSNAQRNSITLTEDHFPTG--NDTAARFNNNWDIVVIIHG 245
            NG  I+N L+  G      + S    NS       + +G  N T     N W+++   +G
Sbjct: 972  NGSFIENKLDSTGDFLSNAWNSLTSNNSTGGGNGTWISGALNSTGRFLTNTWNLLGNCNG 1031

Query: 246  HSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN 419
             +G         +  A  ++GD+  +   W+S S +  S     + G  +S   FL N
Sbjct: 1032 TAGNFVNNTQTWIGGAVDSTGDF--LSNTWNSLSSNNTSGNSTWIAGALNSTGGFLTN 1087


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 6   THFVKTRKMLKLITLLAF 59
           +HF+KTR +LK+I+L+ F
Sbjct: 134 SHFIKTRHLLKVISLIGF 151


>M98552-7|AAK82925.2|  355|Caenorhabditis elegans Hypothetical
           protein ZK370.7 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
 Frame = +3

Query: 6   THFVKTRKMLKLITLLAFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPT 185
           T  V   ++LKL+   A  +  CN D+ Q  E+        YY NA R    ++   F  
Sbjct: 76  TSVVLCAEILKLVITFAMFYKECNFDSRQFSEQVSK-----YYINAPRELAKMSVPSF-- 128

Query: 186 GNDTAARFNNNWDIVVIIHGHSGT-ATTTINPIVKDAF--LTSGDYNVIVVDWSSFSLST 356
               A    NN D V + +  +G    TT   +V  AF  +           W + +L  
Sbjct: 129 ----AYALQNNLDFVGLSNLDAGLYQVTTQLKVVSTAFFMMLFLGRKFSTRRWMAITLLM 184

Query: 357 YSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
           +  A + +  V +S A    N K    + +IVG +
Sbjct: 185 FGVAFVQMNNVSASEA----NTKRETAENYIVGLS 215


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 372 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 482
           + +T   S + TF   LK+P   VHI+G + G    G
Sbjct: 10  LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 339 SFSLSTYSTAVMAVTGVGSSIATFLKNLK--LPLNKVHIVGFNLGAHVAGVTGR-NLEGK 509
           +F  +TYST +   T +GS++ T + N +   PL    +   N    +  V+G   L  K
Sbjct: 333 AFQHNTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNT-VSIDEVSGNVVLRKK 391

Query: 510 VARITGLDPSARDWENNV 563
           + +   L+ +A D EN V
Sbjct: 392 LEKPETLNVTASDGENVV 409


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 191
           +F SL+  YY+   Q + + + EDH    N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 191
           +F SL+  YY+   Q + + + EDH    N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,154,868
Number of Sequences: 27780
Number of extensions: 374995
Number of successful extensions: 1030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)