Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n19f
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...   105   9e-24
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.56 
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    27   3.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.1  
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    25   9.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.1  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score =  105 bits (251), Expect = 9e-24
 Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 6/210 (2%)
 Frame = +1

Query: 154 LKKAGYDFWTDILTIGGNARVMVAPEQEQEFVSYALSVGLKPNVTISNVQALINSQLQPA 333
           LK+  +DFW         + +++    E  F S        P  T + +QA+ N  L   
Sbjct: 115 LKEENFDFWKSQY----RSDILINNLTETLFESIVPDTTNSPFSTEAFLQAVENGHLN-- 168

Query: 334 TNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVIDFK- 510
            +   ++     +  Y +L  I+SWL  + +LY  +   + +G + EGR + G+ ++ + 
Sbjct: 169 -HEMFTSFTDIFFKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRH 227

Query: 511 ---KGERGNNPLIGMIEGGIHSREWISPATVTWIIKEFLTSDDPD--VRFLAETFIWHIV 675
               GE+  N  + +I+GG H+REWI   +V +   + L   D D  VR L + F W  +
Sbjct: 228 PSDNGEKIRNKKVIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFI 287

Query: 676 PVTNPDGYTYTFSEDRMWRKNRNPVNYVPC 765
           PV N DGY YT+S DR+W KNR P+N   C
Sbjct: 288 PVLNVDGYEYTWSNDRLWSKNRQPLNNSEC 317


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 283 VTISNVQALINSQLQP-ATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTTMVI 459
           +T  N   +++SQLQP AT +RSS L SFS   + S   + S   + +    G  T+  +
Sbjct: 456 ITKDNDDIILSSQLQPTATGSRSSRL-SFSRHGHGSQTSLGSIKRKSIMERMGRPTSPFM 514

Query: 460 GTSF 471
           G+SF
Sbjct: 515 GSSF 518


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 238 QEFVSYALSVGLKPN-----VTISNVQALINSQLQPATNARSSTLGSFSWDRYYSLAQIH 402
           +E +  AL +GL  N     VT   +  L+NS+      A ++    +SWD       +H
Sbjct: 172 KEAILKALGIGLSGNPLDIVVTFHKLNELLNSEEVSLRRAATAVYSGYSWDLEIHKLILH 231

Query: 403 S 405
           S
Sbjct: 232 S 232


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
 Frame = +1

Query: 85   SYENYKVYNVVPTSEIHIQTLGDLKKAGYDFWTDILTIGGN---ARVMVAPEQEQEFVSY 255
            +Y NY + ++      H   L   +   Y  W D +  GG    A      E+ Q  VS+
Sbjct: 1846 TYSNYLLKSIKTLPLFHFLDLNVTEYWDYLLWMDSVNYGGKMVAANFSATNEEPQTVVSW 1905

Query: 256  ALSVGLKP 279
             +   L P
Sbjct: 1906 HIKSHLPP 1913


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 690 RICDRNNVPDKGLGQESHIRIIARQELFDDPSDSRRR 580
           RIC RNNVP          R+   Q  ++ PS+ R R
Sbjct: 66  RICQRNNVP----------RLFRSQRFYEKPSEKRSR 92


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 288 CHIRFQTNTKCVAHKLLLLFRGYHHSCVSTD-REDIGPKIISG 163
           CHI+ Q + K V    LLL    H      D R+  G  +++G
Sbjct: 75  CHIKGQVSHKIVTDARLLLCNMTHRGATGADTRDGDGAGVMTG 117


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 236 SCSGATITLAFPPIVRISVQKSYPAFLRSPSVCM*IS 126
           S SG  +TLA     R S+ + Y  F+R   +CM IS
Sbjct: 785 SISGDLVTLAVE--CRSSITRVYKEFIRLSKLCMRIS 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,506
Number of Sequences: 5004
Number of extensions: 66884
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)