Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n19f
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           30   2.4  
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005...    29   3.1  
05_05_0026 + 21645845-21647404                                         28   7.2  
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235...    28   9.5  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 349  STLGSFSWDRYYSLAQIHSWLDELVTL 429
            S+L S + +R+Y+ AQ+ +WL +LV+L
Sbjct: 1019 SSLESLTLERWYNQAQLPNWLGQLVSL 1045


>02_05_1357 +
           35899480-35899578,35900247-35900334,35900438-35900592,
           35900652-35900715,35902910-35902974,35903061-35903126,
           35903644-35903745
          Length = 212

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 376 RYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVID 504
           R  SL  +H W+ EL    PG V  +++GT  + R+ K   +D
Sbjct: 105 RPLSLLSLHEWIPELRHYAPG-VPIILVGTKLDLRDDKQFFVD 146


>05_05_0026 + 21645845-21647404
          Length = 519

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 298 VQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGV 441
           V A I  ++      R  T  SF +D+   +  +H+ L E + L+P V
Sbjct: 337 VAAAIRDEVFRVAGGRDPTAASFDFDKLKDMHYVHAALYESMRLFPPV 384


>06_01_0324 -
           2357432-2357724,2358042-2358105,2358321-2358404,
           2358638-2358715,2359298-2359360,2359459-2359561,
           2359675-2359800,2360212-2360258,2361284-2361388,
           2361483-2361605,2361759-2361854,2362052-2362141,
           2362759-2362815,2362899-2363028,2363613-2363708,
           2363815-2363875,2364391-2364490
          Length = 571

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +1

Query: 544 MIEGGIHSREWISPATV----TWIIKEFLTSDDPDVRFLAETFIWHIVPVTNPDGY 699
           M  G +H  E +    +     W+   +L   DP    + +    HI+P  NPDG+
Sbjct: 178 MYVGNVHGDEPVGREVLIKLANWLCDNYLK--DPLATLIVKNMHLHILPTMNPDGF 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,588,528
Number of Sequences: 37544
Number of extensions: 433471
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)