Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n16f
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 278 7e-76
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 189 3e-49
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 175 4e-45
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 175 7e-45
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 136 2e-33
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 120 2e-28
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 120 2e-28
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 116 3e-27
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 114 1e-26
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 107 1e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 105 6e-24
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 99 7e-22
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 95 1e-20
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 94 2e-20
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 91 2e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 89 4e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 85 1e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 84 2e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 77 3e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 4e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 1e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 64 3e-11
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 61 2e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 56 4e-09
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 56 4e-09
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 53 4e-08
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 51 2e-07
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 50 3e-07
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.008
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.29
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.38
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.5
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 2.7
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 3.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 3.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.2
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 6.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.2
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 6.2
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.2
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 8.2
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 8.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 278 bits (681), Expect = 7e-76
Identities = 124/221 (56%), Positives = 176/221 (79%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI QI
Sbjct: 285 GFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQI 344
Query: 183 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 362
V++ +K +L ++E+ + ++ K +IF TKR A++I+R +R+ GWPA+ +HGD
Sbjct: 345 VEVVDNADKRARLGKDIEEVLKDRDN--KVLIFTGTKRVADDITRFLRQDGWPALAIHGD 402
Query: 363 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 542
K Q ERD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR
Sbjct: 403 KAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGR 462
Query: 543 SKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 665
+ +KGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 463 AGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 189 bits (461), Expect = 3e-49
Identities = 100/225 (44%), Positives = 147/225 (65%), Gaps = 4/225 (1%)
Frame = +3
Query: 3 GFEPQIRKIIEQIR----PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHN 170
GFEPQIR I+E +RQTLM+SAT+P++++ LA D+L DY+ +++G + S + N
Sbjct: 345 GFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSEN 403
Query: 171 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 350
I Q V ++ EK + L +L + P T+IFVETKR A+ ++ + +PA
Sbjct: 404 ITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLIFVETKRMADTLTDYLLNSNFPATS 459
Query: 351 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 530
+HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIG
Sbjct: 460 IHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIG 519
Query: 531 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 665
RTGR+ + G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 520 RTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 175 bits (427), Expect = 4e-45
Identities = 99/220 (45%), Positives = 139/220 (63%), Gaps = 7/220 (3%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPD------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSAN 164
GFE IR II PD RQT+ +SATWP+ V+ LA +L D ++I IGS +L+A+
Sbjct: 325 GFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAAS 383
Query: 165 HNILQIVDICQE-HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWP 341
NI QIV+I + KE L+ LL++ S K +IFV K++A + + R +
Sbjct: 384 QNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YN 442
Query: 342 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 521
V +HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+H
Sbjct: 443 VVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
Query: 522 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQII 641
RIGRTGR+ +KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 503 RIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 175 bits (425), Expect = 7e-45
Identities = 83/223 (37%), Positives = 139/223 (62%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GFEPQ+ +II IRPDRQT+++SAT+P+ ++ LA L ++I +G + A+ + QI
Sbjct: 584 GFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE-VEQI 642
Query: 183 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 362
V++ E K ++L LL E+ +Q +T++FV+ + A+ + ++ + G+ + +HG
Sbjct: 643 VEVRPEESKFSRLLELLGELYNNQLD-VRTLVFVDRQESADALLSDLMKRGYTSNSIHGG 701
Query: 363 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 542
K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR
Sbjct: 702 KDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGR 761
Query: 543 SKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 671
+ G + F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 762 AGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 136 bits (330), Expect = 2e-33
Identities = 71/193 (36%), Positives = 113/193 (58%)
Frame = +3
Query: 51 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVL 230
RQT+M+SAT P V LA+ YL + + + IG++ + + + Q V++ + K+ +
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRR--- 505
Query: 231 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 410
++EI +S IIFV KR E I++ + GW AV +HG K+Q++R+ + Q +
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 411 RASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 590
A ILVATD+A RG+D+ + V+N++ S EDY HRIGRTGR+ GT+ F P ++
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDT 625
Query: 591 RQAKDLVSVLQEA 629
DL +L +
Sbjct: 626 DVYYDLRVLLSRS 638
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 120 bits (290), Expect = 2e-28
Identities = 62/205 (30%), Positives = 109/205 (53%)
Frame = +3
Query: 18 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQ 197
I+++ P +Q +M+SAT E++ + + ++ + ++I + H + Q +
Sbjct: 219 IQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE 278
Query: 198 EHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQE 377
E K K+N LL + +Q +IFV++ +A + R +R +P++C+HG Q+E
Sbjct: 279 EKAKNRKINDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEE 333
Query: 378 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 557
R + FK+ I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR +KG
Sbjct: 334 RIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKG 393
Query: 558 TSYAFFTPSNSRQAKDLVSVLQEAN 632
+ F + Q D + E N
Sbjct: 394 LAITFSSSEEDSQILDKIQERFEVN 418
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 120 bits (289), Expect = 2e-28
Identities = 66/202 (32%), Positives = 112/202 (55%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GF+ QI I + + P Q ++ SAT P++V ++ ++ D I+I + +L+
Sbjct: 177 GFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFY 236
Query: 183 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 362
V + +E K + L L + + +Q +IF T+RK + ++ + + MHGD
Sbjct: 237 VAVEKEEWKLDTLCDLYETVTVTQ-----AVIFCNTRRKVDWLTEQLTERDFTVSSMHGD 291
Query: 363 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 542
Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIGR GR
Sbjct: 292 MDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGR 351
Query: 543 SKSKGTSYAFFTPSNSRQAKDL 608
KG S F T + R +++
Sbjct: 352 FGRKGVSINFVTNDDVRMMREI 373
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 116 bits (280), Expect = 3e-27
Identities = 62/202 (30%), Positives = 111/202 (54%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GF+ QI I + P Q ++ SAT P++V ++ + + ++I + +L+
Sbjct: 179 GFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYF 238
Query: 183 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 362
+ + +E K + L L + +Q +IF ++RK + ++ +R + MHG+
Sbjct: 239 IAVEKEEWKFDTLCDLYDTLTITQ-----AVIFCNSRRKVDWLTEKMREANFTVTSMHGE 293
Query: 363 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 542
Q+ERD ++ F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR
Sbjct: 294 MPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR 353
Query: 543 SKSKGTSYAFFTPSNSRQAKDL 608
KG + F T + R +D+
Sbjct: 354 FGRKGVAINFVTNEDVRILRDI 375
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 114 bits (274), Expect = 1e-26
Identities = 70/191 (36%), Positives = 103/191 (53%)
Frame = +3
Query: 6 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 185
F P I KI++ I +R+TL++SAT +V+KL L +++ + S + S ++Q
Sbjct: 206 FGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS-KFSTVDTLIQRY 264
Query: 186 DICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDK 365
K+ L L+ E+ G IIF T + ++ +R G+ A+ +HG
Sbjct: 265 LFFPFKHKDTYLVYLVNELA-----GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQL 319
Query: 366 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 545
+Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 546 KSKGTSYAFFT 578
G S A T
Sbjct: 380 GRAGKSIALVT 390
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 107 bits (258), Expect = 1e-24
Identities = 60/189 (31%), Positives = 107/189 (56%)
Frame = +3
Query: 63 MWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEI 242
++SAT P V++LA+ D I+I +G + + +++ + + K V+L+++
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKI----VILRQM 281
Query: 243 GQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASI 422
+ E + +IFV+ +A+ + + +HG+ Q +R+E L +F++G +
Sbjct: 282 ISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWV 341
Query: 423 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAK 602
L+ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+ + G + FFT + K
Sbjct: 342 LIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIK 401
Query: 603 DLVSVLQEA 629
+ V++ +
Sbjct: 402 LIAGVMRSS 410
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 105 bits (252), Expect = 6e-24
Identities = 57/191 (29%), Positives = 100/191 (52%)
Frame = +3
Query: 6 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 185
F P I +++ +RQ ++SAT+P VK + +L +IN+ +L+ + Q
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLMD-ELTLR-GVTQYY 260
Query: 186 DICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDK 365
E +K + LN L ++ +Q +IIF + + E +++ I G+ H
Sbjct: 261 AFVDESQKVHCLNTLFSKLQINQ-----SIIFCNSTNRVELLAKKITELGYSCFYSHAKM 315
Query: 366 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 545
Q R+ V + F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR
Sbjct: 316 LQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF 375
Query: 546 KSKGTSYAFFT 578
+G + +F +
Sbjct: 376 GHRGLAISFIS 386
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 98.7 bits (235), Expect = 7e-22
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
G Q +I + + Q +++SAT+ + V+K AE + + +I + + +LS I Q+
Sbjct: 271 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQL 329
Query: 183 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 362
CQ +E+K NVL++ G ++IIF + K AE I+R + G C+ G+
Sbjct: 330 YMDCQS--EEHKYNVLVELYGLLTI--GQSIIFCKKKDTAEEIARRMTADGHTVACLTGN 385
Query: 363 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSEDYIHR 524
+RD ++ F+ G + +LV T+V ARG+DV + V+N+D P + Y+HR
Sbjct: 386 LEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHR 445
Query: 525 IGRTGRSKSKGTSYAF 572
IGRTGR G S F
Sbjct: 446 IGRTGRFGRVGVSINF 461
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 94.7 bits (225), Expect = 1e-20
Identities = 58/197 (29%), Positives = 108/197 (54%), Gaps = 3/197 (1%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPD-RQTLMWSATWPKEVKKLAEDYLGDY-IQINIGSLQLSANHNIL 176
GFE ++R+I++ + + RQTL++SAT +V+ LA L + +N+ S + ++ L
Sbjct: 252 GFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGL 311
Query: 177 QIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMH 356
+ + + +K + +L + ++ + K I+F+ + + ++ + P + +H
Sbjct: 312 EQGYVVVDSDK--RFLLLFSFLKRNLKK--KVIVFMSSCASVKYMAELLNYIDLPVLDLH 367
Query: 357 GDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRT 536
G + QQ R ++F IL+ T+VAARGLD+ + +++ +D P+ DYIHR+GRT
Sbjct: 368 GKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRT 427
Query: 537 GR-SKSKGTSYAFFTPS 584
R +K G S F PS
Sbjct: 428 ARGTKGTGKSLMFLAPS 444
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 93.9 bits (223), Expect = 2e-20
Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GF ++ +II+ RQT+++SAT +V L L +++ + + + +A +
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEF 480
Query: 183 VDICQEHE--KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMH 356
V + + E + L L +E+ +TIIF +K A + A +H
Sbjct: 481 VRVRPQRELLRPAMLIYLCKELFHR-----RTIIFFRSKAFAHKMRVIFGLLSLNATEIH 535
Query: 357 GDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRT 536
G +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT
Sbjct: 536 GSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRT 595
Query: 537 GRSKSKG 557
R+ G
Sbjct: 596 ARAGRSG 602
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 90.6 bits (215), Expect = 2e-19
Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 4/208 (1%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG--DYIQINIGSLQLSANHNIL 176
GF + I+ + RQT+++SAT K VK LA L D+I ++ S N+
Sbjct: 201 GFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTS-STPSNLN 259
Query: 177 QIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY--GWPAVC 350
Q EK L++L I + KTI+F+ + ++ + RR G +
Sbjct: 260 QFYLTVPLTEK---LDILFGFIRTHLK--FKTIVFLSSCKQVRFVYETFRRMRPGISLLH 314
Query: 351 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 530
+HG + Q R EV +F R +L TD+ ARGLD + +VI D P + YIHR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 531 RTGRSKSKGTSYAFFTPSNSRQAKDLVS 614
RT R G + PS K L S
Sbjct: 375 RTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 89.4 bits (212), Expect = 4e-19
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Frame = +3
Query: 48 DRQTLMWSATWPKEVKKLA----EDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKEN 215
DRQTL+++AT +++L ++ + + +S + Q +E
Sbjct: 186 DRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREA 245
Query: 216 KLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLY 395
L V L I ++ + A IIFV R AE I +R +H + Q+ER L
Sbjct: 246 YL-VHLLTIPENAKKSA--IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLG 302
Query: 396 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 575
+F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S +
Sbjct: 303 RFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV 362
Query: 576 T 578
T
Sbjct: 363 T 363
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 84.6 bits (200), Expect = 1e-17
Identities = 50/178 (28%), Positives = 94/178 (52%)
Frame = +3
Query: 135 NIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENIS 314
+I L L N +I ++ +++ L + L+ +S P + T++FV TK E +S
Sbjct: 306 DIIKLPLKDNVRPREIGNVNNPKKRKRALELALKG-SESGSPDS-TLVFVPTKHHVEYVS 363
Query: 315 RNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 494
+ + G+ ++G Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+
Sbjct: 364 ELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDF 423
Query: 495 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 668
P + ++HR+GRT R+ G +Y+ ++ DL L S Q+++ +D
Sbjct: 424 PPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
Score = 35.1 bits (77), Expect = 0.010
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 182
GF Q+ +I+ + RQTL++SAT P+ + A+ L D + + + ++ + ++
Sbjct: 229 GFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL-DVESKVSADLQSA 287
Query: 183 VDICQEHEKENKLNVLLQEI 242
+ E+E L +LQ+I
Sbjct: 288 FFSVKTAEREAALLCILQDI 307
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 84.2 bits (199), Expect = 2e-17
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 4/192 (2%)
Frame = +3
Query: 3 GFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEDYLG-DYIQIN-IGSLQLSANHNI 173
GF I I E + + + L +SAT P +V + LG D+ IN + + + +
Sbjct: 204 GFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERV 263
Query: 174 LQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GWPAVC 350
Q V + + + LLQ++ S P ++ I+F+ T + + + + P
Sbjct: 264 PQFVIETKLDKVFSSSLSLLQQL-TSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFI 322
Query: 351 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 530
+H T +R + F++ ++ IL ATDV ARG+D I V+ P++++DYIHRIG
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 531 RTGRSKSKGTSY 566
RTGR+ G +Y
Sbjct: 383 RTGRAGKTGEAY 394
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 77.0 bits (181), Expect = 3e-15
Identities = 39/117 (33%), Positives = 63/117 (53%)
Frame = +3
Query: 258 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATD 437
PG KT++F + I+ + P+ +H Q++R + L +FK +LV TD
Sbjct: 389 PG-KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 438 VAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 608
VAARG+D+ + +VI++ P++++ Y+HR GRT R+ G S P Q K L
Sbjct: 448 VAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.9 bits (171), Expect = 4e-14
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +3
Query: 351 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 521
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 522 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 647
RIGRT R+ G + F P S L S + AN + P
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.9 bits (151), Expect = 1e-11
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +3
Query: 267 KTIIFVETKRKAENISRNIRRYGWP--AVCMHGDKTQQERDEVLYQFKEG-RASILVATD 437
K I+F + E + Y P V +HG + Q R +FK+ + ++L TD
Sbjct: 258 KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTD 317
Query: 438 VAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSV 617
+A+RGLD+ + +V+ D P + + HR GR GR+ G + + ++L+ V
Sbjct: 318 IASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = +3
Query: 366 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 545
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 546 KSKGTSYAFFTPSNSRQAKDLVSVLQ 623
+G ++ LV L+
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 60.9 bits (141), Expect = 2e-10
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Frame = +3
Query: 201 HEKENKLNVLLQE-IGQSQEPGAKTIIFVETKRKAENISRNIRRY----------GWPAV 347
H K L ++ E + Q + +IFVE + AE I R + ++ G AV
Sbjct: 411 HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAV 470
Query: 348 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 527
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+
Sbjct: 471 RKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRM 530
Query: 528 GRTGRSKSKGTSYAFFTPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 671
GRTGR K KG Y T +AKD LQ+ I+S + S++++
Sbjct: 531 GRTGR-KRKGYIYMLLTRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +3
Query: 444 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 587
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 56.4 bits (130), Expect = 4e-09
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 7/181 (3%)
Frame = +3
Query: 69 SATWPKEVKKLA-EDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIG 245
SAT+P++++ +A + + ++ + S +A NI + E L L++
Sbjct: 1354 SATFPRQLEMVARQTFCTNFYVLRETS---TARENIFYFLHPYDNTEFLLDLRTLMKRTK 1410
Query: 246 QSQEPGAKTIIFVETKRKAENISRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFKE-- 407
+ G + IIF TK+ E I R + + + V ++ GD + +ER F+
Sbjct: 1411 VFEGDG-RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNAN 1469
Query: 408 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 587
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 588 S 590
S
Sbjct: 1530 S 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 56.4 bits (130), Expect = 4e-09
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 7/181 (3%)
Frame = +3
Query: 69 SATWPKEVKKLA-EDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIG 245
SAT+P++++ +A + + ++ + S +A NI + E L L++
Sbjct: 1354 SATFPRQLEMVARQTFCTNFYVLRETS---TARENIFYFLHPYDNTEFLLDLRTLMKRTK 1410
Query: 246 QSQEPGAKTIIFVETKRKAENISRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFKE-- 407
+ G + IIF TK+ E I R + + + V ++ GD + +ER F+
Sbjct: 1411 VFEGDG-RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNAN 1469
Query: 408 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 587
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 588 S 590
S
Sbjct: 1530 S 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +3
Query: 273 IIFVETKRKAENISRNIRR-YGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAAR 449
II+ ++ E ++ +R YG A H + ER + +++ G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 450 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 578
G+D +++VI+ +P S E Y GR GR F++
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 50.8 bits (116), Expect = 2e-07
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Frame = +3
Query: 165 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPG---AKTIIFVETKRKAENISRNIRRY- 332
HN +Q + + H K N L LL+E + G + +IF E + AE I+ +
Sbjct: 438 HNKIQGLSL--NHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIR 495
Query: 333 ---------GWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 485
G Q ++ E + QF+ G + LVAT + GLD+ +I
Sbjct: 496 PMVRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIIC 555
Query: 486 FDYPNSSEDYIHRIGRTGRSKS 551
+D +S I R+GRTGR KS
Sbjct: 556 YDASSSPIRTIQRMGRTGRKKS 577
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 50.4 bits (115), Expect = 3e-07
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Frame = +3
Query: 93 KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 272
++LA D L +++ + + + S N + + D +K KL LL+ + + +T
Sbjct: 307 EELAIDRLKIFVE-DWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSD-SVRT 364
Query: 273 IIFVETKRKAENISRNIRRYGWPAVCMH-----GDKTQQE-------RDEVLYQFKEGRA 416
+IFVE K A +S ++ P + H G Q E + + L++FK G+
Sbjct: 365 VIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKY 424
Query: 417 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 554
++L+AT VA G+DV VI F+ + Y+ GR SK
Sbjct: 425 NVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 366 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 542
T QER ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 595 TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 495 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 647
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/112 (18%), Positives = 51/112 (45%)
Frame = +3
Query: 150 QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRR 329
Q A++ ++ + Q H E ++L+ GQ + + I++ +K ++I +
Sbjct: 697 QPEADYLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELV-- 754
Query: 330 YGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 485
+ ++ + + + G +++AT++A L +DGI YV++
Sbjct: 755 ----ILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVD 802
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 408 GRASILVATDVAARGLDVDGIKYVINFDY 494
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 366 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 485
T +++ +V EG +VAT+VA + + I+YV++
Sbjct: 712 TTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 550 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 666
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 458 IKPSSCNISCYKNTSTTFLELIQNFISFLLSFIAMHANSWPAIS-PYVP 315
+ PSS S N+ ++ + I+N+IS +L + +S AI P++P
Sbjct: 252 VLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIP 300
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 351 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 485
+H T E+ V + ++ +T++A + +DGI YV++
Sbjct: 275 LHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 420 ILVATDVAARGLDVDGIKYVIN 485
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 420 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 581
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 462 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 596
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 456 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 626
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 627 ANQIISPQLQSMAD 668
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 30 IEQIRPDRQTLMWSATWPKEVKKLAED 110
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 512 LHPSY-WENWTFKIKRNIICFLYPFKFP 592
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/99 (20%), Positives = 45/99 (45%)
Frame = +3
Query: 189 ICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKT 368
I Q H K ++L+ GQ + + +I +K+ N+ + A +
Sbjct: 295 IFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQI------QACPLFASLP 348
Query: 369 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 485
Q+++ +V ++++T++A + + GI+YVI+
Sbjct: 349 QEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVID 387
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 453 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 563
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 303 QLFSWFQQKLLFSHQVLDFVQFLA 232
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,989
Number of Sequences: 5004
Number of extensions: 59495
Number of successful extensions: 241
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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