Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n16f
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      161   6e-42
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.54 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.54 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  161 bits (391), Expect = 6e-42
 Identities = 86/218 (39%), Positives = 138/218 (63%), Gaps = 5/218 (2%)
 Frame = +3

Query: 3    GFEPQIRKII--EQIRP--DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHN 170
            GF P I K++  E + P  +RQTLM+SAT+P EV+ LA  +L +Y+ + +G +  + +  
Sbjct: 363  GFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDV 422

Query: 171  ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 350
                 ++ + ++K++ L  +L+    S   G  T++FVE K+KA+ I+  +    +P   
Sbjct: 423  EQNFYEVAR-NKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPTTS 480

Query: 351  MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 530
            +HGD+ Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIG
Sbjct: 481  IHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIG 540

Query: 531  RTGRSKSKGTSYAFFTPSNSRQAK-DLVSVLQEANQII 641
            RTGR  ++G + +FF P      + DLV +L++ANQ +
Sbjct: 541  RTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 549 ILNVQFSQYDGCNPPTNLDNQNLLHI 472
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 549 ILNVQFSQYDGCNPPTNLDNQNLLHI 472
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 386
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 198 EHEKENKLNVLLQEIG 245
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,540
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)