Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n12f
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    32   0.11 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.14 
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    27   3.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    27   4.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.2  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = +3

Query: 579 SMPDIFHENVKRHPNKACFLYENE--------SWSFKQVEEFSLRVTAVLKNHGVKRGDV 734
           ++ DIF  N  + P++ C +            S++++Q++E S  +   L  +G++RGDV
Sbjct: 280 AIQDIFASNAAKFPDRECIVVTPSVTIDAPVTSYTYRQIDESSNILAHHLVKNGIERGDV 339

Query: 735 VGV 743
           V V
Sbjct: 340 VMV 342


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +3

Query: 591  IFHENVKRHPNKAC--FLYENES---WSFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMN 752
            +F +    HP+     F+Y  +    +S+K   E+S++ +  L + G+K+ DVV V ++
Sbjct: 1755 LFEKEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIKASYWLHSIGIKKNDVVAVFID 1813


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 421 VLSSSLYFWWYSPLAISGNGCTSRPELL 504
           ++   L  WW S   + G G   RPE L
Sbjct: 195 LIDEELLGWWISERQVKGGGLNGRPEKL 222


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 350 VKYFSPRHSIRITVLFAFFDVNSTGFHLF---MIIICVIHVAIYRRNNVHHCDLLLQFNN 180
           VK+      +   +L A FD  STG+      M +  V+ +A Y   N  + DL++  NN
Sbjct: 130 VKFEGKSKDLFPILLSAHFDSVSTGYGATDDGMGVATVMAIARYYAKNQPNRDLIININN 189

Query: 179 YSSN*LF 159
              + LF
Sbjct: 190 AEEDYLF 196


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -3

Query: 560 ITRKSQDFNITPQCRKISRSSSGRDVQPFPEIANGEYHQKYNEDDKTGE-----PVLEHP 396
           + RK+Q      Q  +   S++ + + P PE ++   +QK N D+K G+     PV+  P
Sbjct: 294 LKRKTQQDQQHQQQLQQQLSATPQAINPPPERSSFRNYQKQNFDEKGGDINTTVPVINDP 353

Query: 395 GDATG 381
             ATG
Sbjct: 354 -SATG 357


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 471  WKWLYIAARTAPRDFSALWCYVKIL 545
            WK +Y+       D S  +CY K+L
Sbjct: 2353 WKNIYVWTNVPDCDISRFYCYTKML 2377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,653
Number of Sequences: 5004
Number of extensions: 62910
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)