Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n12f
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428...    42   4e-04
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605...    42   5e-04
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180...    33   0.25 
09_06_0236 - 21781508-21783043,21783307-21783504                       32   0.44 
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774...    31   1.4  
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965...    29   3.1  

>02_01_0577 +
           4280590-4281225,4281749-4282102,4282214-4282412,
           4284991-4285204,4285299-4285401,4285481-4285639
          Length = 554

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +3

Query: 648 ESWSFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMNNCPEIA 770
           ES+++ +VE  S R  A L+  GV +GDVV  ++ NCPE A
Sbjct: 51  ESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFA 91


>06_03_0983 -
           26559772-26559915,26560149-26560251,26560335-26560548,
           26563352-26563550,26564509-26564862,26565430-26566086
          Length = 556

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +3

Query: 654 WSFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMNNCPEIA 770
           +S+ +VEE S R  A L+  GV +GDVV  ++ NCPE A
Sbjct: 57  YSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFA 95


>05_01_0243 -
           1806770-1806832,1806942-1807061,1807275-1807457,
           1807554-1807693,1807768-1808010,1808664-1808781,
           1808902-1808977,1809054-1809120,1809201-1809288,
           1809381-1809491,1809632-1809799,1809946-1810040,
           1810123-1810162,1810242-1810318,1810607-1810655,
           1810756-1810812,1810959-1811048,1811160-1811223,
           1812085-1812245
          Length = 669

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 657 SFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMNNCPE 764
           S+++V E  L+V + L+  GVK G  +G+  +NCP+
Sbjct: 83  SYREVYEEVLQVGSALQQLGVKPGSRIGIYGSNCPQ 118


>09_06_0236 - 21781508-21783043,21783307-21783504
          Length = 577

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 597 HENVKRHPNKACFLYENESWSFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMNNCPEI 767
           H     + ++   +Y   S++++Q     LR+ A L++  V + DVV V+  N P +
Sbjct: 21  HRAASVYADRTSVVYGATSFTWRQTHHRCLRLAAALQSLAVSKNDVVSVIAPNTPAL 77


>04_04_1568 -
           34475707-34476822,34476894-34477083,34477330-34477464,
           34477571-34477668,34477789-34477979,34478784-34479286,
           34480169-34481568,34481655-34481855
          Length = 1277

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 636 LYENESWSFKQVEEFSLRV-TAVLKNHGVKRGDVVGVMMNNCP 761
           +Y +  +++ Q     LR+ +A++ + G+ RGDVV V++ N P
Sbjct: 34  VYHDTVFTWSQTHRRCLRLASALVSSLGISRGDVVSVLLPNVP 76


>02_05_0403 -
           28696043-28696153,28696245-28696347,28696443-28696510,
           28696582-28696727,28698038-28699124
          Length = 504

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 618 PNKACFLYE--NESWSFKQVEEFSLRVTAVLKNHGVKRGDVVGVMMNNCPEIA 770
           P+  C +      +++F +      R  A L   GV  GD V V++ NC E A
Sbjct: 55  PDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFA 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,148,109
Number of Sequences: 37544
Number of extensions: 410506
Number of successful extensions: 1011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)