Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n12f
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.26 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 537 KILRLSGNFGKKNWSMPDIFHENVK 611
           ++L LSG+F +K W +PD F  N K
Sbjct: 104 EVLTLSGDFAEKIW-VPDTFFANDK 127


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -3

Query: 449 HQKYNEDDKTGEPVLEHPGDATGY--HDNC 366
           +  Y+ + K G   L  PG   GY   D C
Sbjct: 141 YDPYSPNSKIGRDELSQPGSLNGYGSSDGC 170


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 698 CRNTKTEFFDLF 663
           C N KT FF +F
Sbjct: 411 CENPKTNFFSIF 422


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 260 IIICVIHVAIYRRNNVHHCDLLLQFNNYSSN 168
           II  + +  I+  NN ++ +    +NNY++N
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,664
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)