Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n08f
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 59 4e-09
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 51 1e-06
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 46 2e-05
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.010
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 33 0.17
AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical ... 31 0.69
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 30 2.1
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 58.8 bits (136), Expect = 4e-09
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Frame = +3
Query: 186 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 365
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 366 AFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINLA---SXX 536
N + + ++H YN +ND+A++ + I+ + L S
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151
Query: 537 XXXXXXXXXXXXXXRTSDAASG----ANNQQKRQVSLQVITNAVCARTYG-----NSVII 689
+ +SG N+Q + S+ +I++ C +T+ + I
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211
Query: 690 GSTLCVSGANGRSTCSGDSGGPLSI 764
G +C +GA T GDSGGPL I
Sbjct: 212 GYQIC-AGAYLHGTAPGDSGGPLLI 235
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 50.8 bits (116), Expect = 1e-06
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 5/196 (2%)
Frame = +3
Query: 186 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRNAQARQFTL 365
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ ++ + +++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCF-AKDRRPTSYSV 112
Query: 366 AFGTANIFSGGTRVTTSSVHLHGSYNMNNLNN-DVAIIN-HNHVGFNNNIQRINLASXXX 539
G SG T +V +H YN+ ++ D AI+ H V + + I L S
Sbjct: 113 RVGGHRSGSGSPHRVT-AVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPA 171
Query: 540 XXXXXXXXXXXXXRTSDAASGANNQQKRQVSLQVITNAVCAR--TYGNSVIIGSTLCVSG 713
++ S + R++ + +++ C+ Y + + S LC
Sbjct: 172 VENRLCVVTGWG--STIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY 229
Query: 714 ANGR-STCSGDSGGPL 758
+ G+ +C GDSGGPL
Sbjct: 230 SYGKIDSCQGDSGGPL 245
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 46.4 bits (105), Expect = 2e-05
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 7/199 (3%)
Frame = +3
Query: 186 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRNAQARQFT 362
R+VGG GA P A L T CGAS+L T +TAAHC+ + +
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 363 LAFGTANIFSGGTRV-TTSSVHLHGSYNMNNLNNDVAIINHNHVG--FNNNIQRINLASX 533
+ N G ++ +H + Y + ++D+AI+ + G FN Q I L S
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142
Query: 534 XXXXXXXXXXXXXXXRTSDAASGANNQQKRQVSLQVITNAV-CARTYG-NSVIIGSTLCV 707
+ + G ++ Q +L I N C + S + S C
Sbjct: 143 DFVYTPGRQCVV----SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCA 198
Query: 708 SGANGR-STCSGDSGGPLS 761
G +C GDSGGP +
Sbjct: 199 GYLEGGIDSCQGDSGGPFA 217
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 183 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 326
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 627 VSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTCSGDSGGPLS 761
++L T A C +G S+ S C + ++ CSGDSGG L+
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLT 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 201 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 332
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical
protein Y44A6D.3 protein.
Length = 229
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 390 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 512
+ R+ S H G +NN+NN+ NHNH NNNIQ
Sbjct: 68 AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 582 TSDAASGANNQQKRQVS---LQVITNAVCARTYGNSVIIGSTL-CVSGANGRSTCSGDS 746
TS ++G++ + VS +T++ + T G S + GST+ VSG+ G ST +G+S
Sbjct: 1037 TSSGSTGSSTEAGSTVSGSSASTVTSSTGSSTSGESTVSGSTVSTVSGSTG-STITGES 1094
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 246 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 127
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 246 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 127
SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 413 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 327
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 413 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 327
GG PG AG+ S G+ G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,976
Number of Sequences: 27780
Number of extensions: 269349
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -