Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18n04r
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   8.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.6  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 199 KQKHVSNKNEFHLITSRP 252
           KQKH +NK   +L T RP
Sbjct: 78  KQKHTANKVVNYLKTKRP 95


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 199 KQKHVSNKNEFHLITSRP 252
           KQKH +NK   +L T RP
Sbjct: 78  KQKHTANKVVNYLKTKRP 95


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 626 KGFDY*ALEPN*NYL*YGRYG*FWIYESANKHAEFGTNKLITIFYVIFI 772
           + F   +  P   ++ YG    F+IY   +       NK++++FY   I
Sbjct: 114 RNFSTCSSHPTAAFISYGTL--FFIYVQPSATFSLDLNKVVSVFYTAVI 160


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 627 KVLIIEPWNQIKIIYNMAATVDFGYTNLQINMQSLELIN 743
           ++L ++  ++  I    +  V  GY  + I +QSL L N
Sbjct: 223 RILRLDAIDEASIAVGASGNVFAGYLLVFIGLQSLSLTN 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,567
Number of Sequences: 438
Number of extensions: 5332
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)