Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n04f
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 256 1e-68
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 93 3e-19
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 90 1e-18
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 32 0.39
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642... 31 0.91
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 30 1.6
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 29 2.8
01_06_1588 + 38474698-38477169 29 2.8
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061... 29 3.7
02_05_0145 - 26262286-26262480,26262811-26262876,26263029-262631... 29 4.8
01_05_0608 - 23628100-23631486 29 4.8
12_01_0608 - 5013076-5013489,5014698-5015228,5015632-5016005,501... 28 6.4
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 28 6.4
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 28 6.4
09_04_0112 - 14757947-14758972 28 6.4
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 28 8.5
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 256 bits (627), Expect = 1e-68
Identities = 117/187 (62%), Positives = 148/187 (79%)
Frame = +1
Query: 148 ISKVLIANRGEIACRVMRTAKKLGVRTVAVYSDADRHAMHVEMADEAYHIGPAPSTQSYL 327
+ KVL+ANRGEIACRVMRTA++LG+ TVAVYSDADR A+HV ADEA +GP P+ +SYL
Sbjct: 39 VEKVLVANRGEIACRVMRTARRLGIPTVAVYSDADRGALHVRAADEAVRLGPPPARESYL 98
Query: 328 NASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDIIFIGPPPSAIRDMGIKSTSKA 507
NAS I++ A ++ ++AIHPGYGFLSE+ +F + C +E + FIGPPPSAIRDMG KS SK
Sbjct: 99 NASAIVDAALRTGAKAIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKR 158
Query: 508 IMSAAGVPIVRGYHGEDQNIERLKAEAQRIGFPLMIKAVRGGGGKGMRIAMTESDFLPQL 687
IM AAGVP+V GYHG +Q+IE LK EA +IG+P++IK GGGGKGMRI DF+ +
Sbjct: 159 IMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSV 218
Query: 688 ESAKRES 708
SA+RE+
Sbjct: 219 LSAQREA 225
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 92.7 bits (220), Expect = 3e-19
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 32/203 (15%)
Frame = +1
Query: 139 RTQISKVLIANRGEIACRVMRTAK---------KLGVRTVAVYSDADR--HAMHVEMADE 285
+T I VL+AN G A + MR+ + + ++ +A+ + D +A H+ +AD+
Sbjct: 219 KTPIHSVLVANNGMAAAKFMRSVRTWANDTFGSEKAIQLIAMATPEDLRINAEHIRIADQ 278
Query: 286 AYHIGPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDIIFIGPPP 465
+ + +Y N I+E+A+++ A+ PG+G SEN E + ++ I+F+GPP
Sbjct: 279 FVEVPGGTNNNNYANVQLIVEIAERTGVSAVWPGWGHASENPELPDALTAKGIVFLGPPA 338
Query: 466 SAIRDMGIKSTSKAIMSAAGVPIV--RGYHGE-----------DQ--------NIERLKA 582
S++ +G K S I AAGVP + G H E D+ E A
Sbjct: 339 SSMHALGDKVGSALIAQAAGVPTLAWSGSHVEVPLECCLDSIPDEMYRKACVTTTEEAVA 398
Query: 583 EAQRIGFPLMIKAVRGGGGKGMR 651
Q +G+P MIKA GGGGKG+R
Sbjct: 399 SCQVVGYPAMIKASWGGGGKGIR 421
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 90.2 bits (214), Expect = 1e-18
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 31/199 (15%)
Frame = +1
Query: 148 ISKVLIANRGEIACRVMRTAKKLGVRT-----------VAVYSDADRHAMHVEMADEAYH 294
I VL+AN G A + MR+ + + T +A D +A H+ +AD+
Sbjct: 39 IHSVLVANNGMAAVKFMRSIRTWALETFGTEKAILLVAMATPEDLKINAEHIRIADQFVE 98
Query: 295 IGPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLSENVEFCEKCASEDIIFIGPPPSAI 474
+ + +Y N I+E+A++++ A+ PG+G SEN E + + IIF+GPP +A+
Sbjct: 99 VPGGTNNNNYANVQLIVEIAERTHVSAVWPGWGHASENPELPDALKEKGIIFLGPPSAAM 158
Query: 475 RDMGIKSTSKAIMSAAGVPIV--RGYH----GEDQN--------------IERLKAEAQR 594
+G K S I AAGVP + G H E N E A Q
Sbjct: 159 AALGDKIGSSLIAQAAGVPTLPWSGSHVKIPPESCNSIPEEMYRSACVSTTEEAVASCQV 218
Query: 595 IGFPLMIKAVRGGGGKGMR 651
+G+P MIKA GGGGKG+R
Sbjct: 219 VGYPAMIKASWGGGGKGIR 237
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 32.3 bits (70), Expect = 0.39
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 76 PLTTLQNNIRYNHA----QIKEKVQRTQISKVLIANRGEIACRVMRTAKKLGVRTVAVYS 243
P +NN+ Y++A +++V++ + +V +A R EI V + VRTV Y+
Sbjct: 555 PTDPAENNVAYDNALGTTSSRDRVEKAR--RVALARRPEILSYVRNRSIPGDVRTVLDYA 612
Query: 244 DADRHAMHVEMADE 285
D+D A V+ A E
Sbjct: 613 DSDGVAKAVKPAKE 626
>02_05_0309 +
27762613-27763070,27763940-27764060,27764168-27764287,
27764633-27764863,27764964-27765503
Length = 489
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 544 YHGEDQNIERLKAEAQRIGFPLMIKAVRGGGGKGMRIAMT 663
Y GE++ +E E + PLM+ A RGGGG G+ + T
Sbjct: 44 YEGEEEEME---GEVP-VSSPLMLPAARGGGGGGVSVVET 79
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 81 DNTSEQYKVQPCTNQRESSKNTDQQSIDSKQRGD-SMSGHENC 206
++T E + PC + ESS D +S D G SMSG ENC
Sbjct: 286 EDTGELICLDPCIAESESS---DSESSDEDDPGRISMSGEENC 325
>03_01_0265 +
2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = -2
Query: 381 MYSLTVRLFSYFKNFRCI*IALCGRCRPNVVSLICHFNMHSMSVGIRINSHCPDSQFLCS 202
MY + + SYF F C + + G R ++ ++C F ++ + + + S +S L
Sbjct: 458 MYIIIPSVLSYFSKFECH-LTVSGEQRAALLKMVCFFLVNLILLRALVESSL-ESWILSM 515
Query: 201 SHDPTCYLPSVCYQYFADLCSLNFL 127
CYL SV + S +FL
Sbjct: 516 GR---CYLDSVDCKQIEQYLSPSFL 537
>01_06_1588 + 38474698-38477169
Length = 823
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 118 VHGCTLYCSEVLS-VDYFYKDSVNNAFLKSTAF 23
V GC C E+ + V + YKD V++ +LKS F
Sbjct: 366 VDGCKAACLELCNCVAFEYKDDVSDCYLKSALF 398
>10_07_0147 +
13404711-13404764,13404865-13405232,13406105-13406153,
13406374-13406470,13406863-13407011,13407554-13407667,
13408196-13408327,13409143-13409256,13410233-13410454
Length = 432
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 481 MGIKSTSKAIMSAAGVPIVRGYHGEDQNIERLKAEAQRIGFPLMIKAVRGGGGK 642
+G S+ + + A IVRG G+ + L A A R P +++ + GG+
Sbjct: 9 LGFLSSPQPNVRGAAAGIVRGLTGDADGLRALSARADR-ALPALLRLLASAGGE 61
>02_05_0145 -
26262286-26262480,26262811-26262876,26263029-26263125,
26263283-26263341,26263372-26263532,26264039-26264087,
26264142-26264205,26264294-26264469
Length = 288
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 359 SLTVKLYIQATDFYLKMLNSVKNVLLKILYSLAHHLQLLEIWVSKVRQKLLCQQ 520
S LY D+ L L + L K+L S H+ +E V+ +RQK QQ
Sbjct: 116 SFVPDLYAIDADYALSELCKDEQKLEKVLLSREFHVHQIESLVAMLRQKFRSQQ 169
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 298 GPAPSTQSYLNASKILEVAKKSNSQAIHPGYGFLS 402
GPAPS L +IL+++ S S + PG G LS
Sbjct: 539 GPAPSWVGALGNLQILDLSHNSFSGPVPPGIGSLS 573
>12_01_0608 -
5013076-5013489,5014698-5015228,5015632-5016005,
5016389-5016637,5016942-5017047
Length = 557
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 454 GPPPSAIRDMGIKSTSKAIMSAAGVPIVRGYHGEDQNIERLKAEAQRIGFPLMIKAVRGG 633
GP A G K K + +P + D + + E Q G P+++KA
Sbjct: 215 GPSSEAAALEGSKDFMKKLCDKYHIPTAKYQSFTDPSDAKKYVEEQ--GAPIVVKADGLA 272
Query: 634 GGKGMRIAMT 663
GKG+ +AMT
Sbjct: 273 AGKGVVVAMT 282
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 290 TTLGLHLPHKAI*MHLKFLK*LKSLTVKLYIQATDFYLKMLNSVKNVLLKILYSLAHHLQ 469
TT+ H P M K + +K V+LY +A FYL+ + N LL +L H +
Sbjct: 1390 TTIMNHSPDAWDHMQFKDVA-VKVANVELYYKAVHFYLQEHPDLINDLLNVLALRLDHTR 1448
Query: 470 LLEI 481
+++I
Sbjct: 1449 VVDI 1452
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 290 TTLGLHLPHKAI*MHLKFLK*LKSLTVKLYIQATDFYLKMLNSVKNVLLKILYSLAHHLQ 469
TT+ H P M K + +K V+LY +A FYL+ + N LL +L H +
Sbjct: 1390 TTIMNHSPDAWDHMQFKDVA-VKVANVELYYKAVHFYLQEHPDLINDLLNVLALRLDHTR 1448
Query: 470 LLEI 481
+++I
Sbjct: 1449 VVDI 1452
>09_04_0112 - 14757947-14758972
Length = 341
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 457 PPPSAIRDMGIKSTSKAIMSAAGVPIVRGYHGED 558
PPP D I T+ A +AA I G H E+
Sbjct: 300 PPPPHATDFNINGTATAATAAAAATIAAGNHQEN 333
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 27 AVDFKNALFTLSL*K*STDNTSEQYKVQPCTNQRESSKNTDQQSIDSKQRGDSMSGHENC 206
AV N L TL L K + ++ + ++Q SS D+ +Q GDS S +N
Sbjct: 284 AVQVMNLLKTLIL-KTLREREHDESEYSAISSQSSSSDELDEMHHHVEQGGDSGSDTDNF 342
Query: 207 KEIGSQ 224
+ GSQ
Sbjct: 343 GDDGSQ 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,532
Number of Sequences: 37544
Number of extensions: 418260
Number of successful extensions: 1378
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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