Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n03f
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.006
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 34 0.018
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.032
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.032
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 31 0.13
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.29
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.2
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 28 1.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.7
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 3.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 4.8
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 6.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 6.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 8.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 8.4
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 334 IEPLLSQYGNVQHCDKANTRDPNTQAV----FITFESPEQAQQAINGLNGCELEGCRIKV 501
+E L S++G ++ C A+ P+T+ F++F P +A QAIN LNG R+ V
Sbjct: 437 LEELFSKFGRIKSCTLASY--PSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 502 EAAEQ 516
AE+
Sbjct: 495 NYAEK 499
Score = 33.5 bits (73), Expect = 0.032
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = +1
Query: 292 VLISGLPLHIRFDNIEPLLSQYGNVQ--HC-----DKANTRDPNTQAVFITFESPEQAQQ 450
+ + LP + ++ L +GN H +K+ T FITFE+ A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 451 AINGLNGCELEGCRIKVE 504
AI LNG +G +KVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 34.3 bits (75), Expect = 0.018
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVEAAEQ 516
F F SPE+A+ + LNG E+ G R++VE Q
Sbjct: 277 FANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQ 310
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVEAAEQ 516
F F PE+AQ + LNG E+ G R++VE Q
Sbjct: 247 FANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQ 280
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.032
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 277 RRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQ-AVFITFESPEQAQQA 453
++ +V + L +R+ ++ + Q GNV +C+ N + ++ I + + E+A+ A
Sbjct: 63 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTA 122
Query: 454 INGLNGCELEGCRIKV-EAAEQN 519
I L+ + G + + E EQN
Sbjct: 123 IKTLSNQKFMGRLVYIREDREQN 145
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARV 702
LRLL+ ++G+IIGR G I+LI + R+
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRM 212
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 619 VQSDMVGAIIGRQGSTIRLITQQSRARVDVHRK 717
+ +DMVG IIGR GS I I + S +++ + ++
Sbjct: 327 IPADMVGCIIGRGGSKISEIRRTSGSKISIAKE 359
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 280 RSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA-VFITFESPEQAQQAI 456
+ +K+LI LP +++ LL YG ++ D + + F F + +A A+
Sbjct: 719 KGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAM 778
Query: 457 NGLNGCELEGCRIKVEAA 510
L L G + ++ A
Sbjct: 779 RALKNTHLLGRHLVLQYA 796
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVEAAEQ 516
F+ F+ A A++ +NG L+G +++++ + Q
Sbjct: 669 FVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 631 MVGAIIGRQGSTIRLITQQSRARVDVHRKDN 723
+VGAIIG G ++ I ++ R+ + +++N
Sbjct: 235 VVGAIIGTNGQNLKSIMDRTSTRIQIPKRNN 265
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 619 VQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+ S V ++GR GST+ I Q ++D+
Sbjct: 889 IPSKAVSRVVGRNGSTVENIRTQFDVKIDI 918
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 482 SNSHPFNPFMACCACSGLSKVMNTAWVLG 396
SNS F+PF+AC A G+ ++N +LG
Sbjct: 469 SNSK-FHPFVACAASDGIVTIVNPFRLLG 496
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 479 NSHPFNPFMACCACSGLSKVMNTAWVLG 396
N HPF +C + S SK T W++G
Sbjct: 86 NRHPFTRVKSCFSSSSPSKFSFTQWLVG 113
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 379 KANTRDPNTQAVFITFESPEQAQQAINGLNGCELEGCRIKVEAA 510
+ TR + F+TF + E +AI LNG L+ I V+ A
Sbjct: 81 RRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ V I L I + S +G + C A N + F+ F+S E A AI
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Query: 460 GLNGCELEGCRIKV 501
+NG L ++ V
Sbjct: 227 HVNGMLLNDKKVYV 240
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 152 IVTSLSLNGRAFP--VSVCCITHSIY*FHTKVDYLTICSKWRSF 277
++ S+ NGR P S+C H+ D+L I W+S+
Sbjct: 1 MLKSVGTNGRKVPKIASLCNFLKFNKNIHSNPDFLAIAENWKSY 44
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 640 AIIGRQGSTIRLITQQSRARVDV 708
AI+G QG+ ++ I Q++R RV +
Sbjct: 308 AIVGPQGAYVKHIQQETRTRVQI 330
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 299 MSTFEDLRNFAILSRLSNSPLLYETNKYCE*CNTPTQEMHDRLKRD 162
+ T + R F++ NSPL N+Y E P E+ D LKR+
Sbjct: 368 LKTILENRGFSVSD---NSPLSLALNQYMEDLLVPFIEVDDYLKRE 410
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 605 HCVCWCRATWSALSSVARAVPFD 673
HC WC A+W A S+A+ FD
Sbjct: 406 HCF-WCSASWLAGISLAKKKNFD 427
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 223 LVSYKSGLFDNLLKMAKFRRSSKVLISGLPLHIRFDNIEPLLS--QYGNVQHCDKANTRD 396
L + +S L++ L ++FR ++++LI+G PL + L++ G D+ N
Sbjct: 529 LKNSESSLYETL---SQFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELNFDQ 585
Query: 397 PNTQ 408
PN +
Sbjct: 586 PNAE 589
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 400 NTQAVFITFESPEQAQQAINGLNGCELEGCRIKVE 504
N +ITF + +A L+ ++ CRIK++
Sbjct: 309 NKDGFYITFNNYREASNCYRALDRTYVQNCRIKLK 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,259
Number of Sequences: 5004
Number of extensions: 56103
Number of successful extensions: 207
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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