Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n03f
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 43 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 43 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 43 3e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 6e-04
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 39 0.004
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 39 0.004
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 39 0.004
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 39 0.004
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 37 0.013
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 37 0.013
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 37 0.013
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 37 0.013
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 37 0.017
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 37 0.017
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 35 0.052
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 34 0.12
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 34 0.12
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.21
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 33 0.28
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 33 0.28
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.48
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.48
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.48
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.64
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 31 0.84
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 31 1.1
U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical pr... 30 1.5
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical p... 30 1.9
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 3.4
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 29 4.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 4.5
U80444-9|AAO12448.1| 71|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80444-8|AAO12446.1| 67|Caenorhabditis elegans Hypothetical pr... 29 4.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 4.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 4.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 4.5
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = +1
Query: 277 RRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAI 456
++ + V + H + +E L +++GN+ C+ + F+ F +PE+A+ A+
Sbjct: 150 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 209
Query: 457 NGLNGCELEGCRIKV 501
L+ +EG +K+
Sbjct: 210 QALHDSTIEGTDLKL 224
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = +1
Query: 277 RRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAI 456
++ + V + H + +E L +++GN+ C+ + F+ F +PE+A+ A+
Sbjct: 147 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 206
Query: 457 NGLNGCELEGCRIKV 501
L+ +EG +K+
Sbjct: 207 QALHDSTIEGTDLKL 221
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ + I L I +I S +GN+ C A D ++ F+ FE+ E AQ AI
Sbjct: 56 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 115
Query: 460 GLNGCELEGCRIKV 501
+NG L G ++ V
Sbjct: 116 KVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = +1
Query: 277 RRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAI 456
++ + V + H + +E L +++GN+ C+ + F+ F +PE+A+ A+
Sbjct: 210 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 269
Query: 457 NGLNGCELEGCRIKV 501
L+ +EG +K+
Sbjct: 270 QALHDSTIEGTDLKL 284
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ + I L I +I S +GN+ C A D ++ F+ FE+ E AQ AI
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
Query: 460 GLNGCELEGCRIKV 501
+NG L G ++ V
Sbjct: 179 KVNGMLLAGKKVFV 192
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/75 (21%), Positives = 38/75 (50%)
Frame = +1
Query: 277 RRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAI 456
++ + V + H + +E + +++GN+ C+ + F+ F +PE+A+ A+
Sbjct: 210 KQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 269
Query: 457 NGLNGCELEGCRIKV 501
L+ +EG +K+
Sbjct: 270 QALHDSTIEGTDLKL 284
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ + I L I +I S +GN+ C A D ++ F+ FE+ E AQ AI
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
Query: 460 GLNGCELEGCRIKV 501
+NG L G ++ V
Sbjct: 179 KVNGMLLAGKKVFV 192
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA-VFITFESPEQAQQAIN 459
++K+ I GLP ++ D ++ LL +G ++ N++ F + P QAI
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349
Query: 460 GLNGCELEGCRIKVEAAEQN 519
GLNG +L ++ V+ A N
Sbjct: 350 GLNGMQLGDKQLVVQLACAN 369
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA-VFITFESPEQAQQAIN 459
++K+ I GLP ++ D ++ LL +G ++ N++ F + P QAI
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349
Query: 460 GLNGCELEGCRIKVEAAEQN 519
GLNG +L ++ V+ A N
Sbjct: 350 GLNGMQLGDKQLVVQLACAN 369
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA-VFITFESPEQAQQAIN 459
++K+ I GLP ++ D ++ LL +G ++ N++ F + P QAI
Sbjct: 265 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 324
Query: 460 GLNGCELEGCRIKVEAAEQN 519
GLNG +L ++ V+ A N
Sbjct: 325 GLNGMQLGDKQLVVQLACAN 344
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA-VFITFESPEQAQQAIN 459
++K+ I GLP ++ D ++ LL +G ++ N++ F + P QAI
Sbjct: 268 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 327
Query: 460 GLNGCELEGCRIKVEAAEQN 519
GLNG +L ++ V+ A N
Sbjct: 328 GLNGMQLGDKQLVVQLACAN 347
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV--FITFESPEQAQQAI 456
S+ + I GL + D + + S+YGN+ + N F+ FESP+ A A+
Sbjct: 106 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 165
Query: 457 NGLNGCELEGCRIKVEAAEQN 519
+GLN ++ K++ EQ+
Sbjct: 166 DGLNTEGVQAQMAKLQQQEQD 186
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV--FITFESPEQAQQAI 456
S+ + I GL + D + + S+YGN+ + N F+ FESP+ A A+
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 139
Query: 457 NGLNGCELEGCRIKVEAAEQN 519
+GLN ++ K++ EQ+
Sbjct: 140 DGLNTEGVQAQMAKLQQQEQD 160
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 448 QAINGLNGCELEGCRIKVEAAEQNXXXXXXXXXXXXXXXXXXXXXXSRPTDFPLRLLVQS 627
Q++NG C +EG +V A Q + P + +L+ +
Sbjct: 47 QSVNGFRNCTIEGPPDQVAVARQ-------MITQVINRNQTGAQPGAAPGEVTEEMLIPA 99
Query: 628 DMVGAIIGRQGSTIRLITQQSRAR 699
D +G +IG+ G TIR++ +QS R
Sbjct: 100 DKIGLVIGKGGETIRIVQEQSGLR 123
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 619 VQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
V +VG +IG+ GS IRLI Q S RV +
Sbjct: 13 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQM 42
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 448 QAINGLNGCELEGCRIKVEAAEQNXXXXXXXXXXXXXXXXXXXXXXSRPTDFPLRLLVQS 627
Q++NG C +EG +V A Q + P + +L+ +
Sbjct: 94 QSVNGFRNCTIEGPPDQVAVARQ-------MITQVINRNQTGAQPGAAPGEVTEEMLIPA 146
Query: 628 DMVGAIIGRQGSTIRLITQQSRAR 699
D +G +IG+ G TIR++ +QS R
Sbjct: 147 DKIGLVIGKGGETIRIVQEQSGLR 170
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 619 VQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
V +VG +IG+ GS IRLI Q S RV +
Sbjct: 60 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQM 89
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAINGLNGCE 477
+S +P R +++ + ++G V + + F+T E P+ A++A L+G
Sbjct: 157 VSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSM 216
Query: 478 LEGCRIKVEAA 510
+EG +I+V A
Sbjct: 217 IEGRKIEVNCA 227
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAINGLNGCE 477
+S +P R +++ + ++G V + + F+T E P+ A++A L+G
Sbjct: 157 VSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSM 216
Query: 478 LEGCRIKVEAA 510
+EG +I+V A
Sbjct: 217 IEGRKIEVNCA 227
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 35.1 bits (77), Expect = 0.052
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+RLL+Q VG+IIG++G I+ I ++S A++++
Sbjct: 74 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI 107
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 598 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVD 705
D+P+R +V+ IIG GSTI+ I +R RVD
Sbjct: 186 DWPIRCVVEGKYHAVIIGPNGSTIKDIASSTRCRVD 221
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+R+ V M+GA+IG +G I++I + + A V +
Sbjct: 419 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 452
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 598 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVD 705
D+P+R +V+ IIG GSTI+ I +R RVD
Sbjct: 310 DWPIRCVVEGKYHAVIIGPNGSTIKDIASSTRCRVD 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+R+ V M+GA+IG +G I++I + + A V +
Sbjct: 543 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 576
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAINGLNGCE 477
+S +P R ++ + + G V + + F+T ++P+ A +A NG
Sbjct: 104 VSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTT 163
Query: 478 LEGCRIKVEAAEQ 516
+EG R++V A Q
Sbjct: 164 IEGRRVEVNLATQ 176
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQAINGLNGCE 477
+S +P R ++ + + G V + + F+T ++P+ A +A NG
Sbjct: 104 VSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTT 163
Query: 478 LEGCRIKVEAAEQ 516
+EG R++V A Q
Sbjct: 164 IEGRRVEVNLATQ 176
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVEAAEQ 516
++TFE+ +Q AI+GLNG + +KV A+Q
Sbjct: 57 YVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQ 90
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ + I L I ++ S +GN+ C A + N++ F+ FE+ AQ AI
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIE 203
Query: 460 GLNGCELEGCRIKV 501
+NG L ++ V
Sbjct: 204 KVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 SSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAV-FITFESPEQAQQAIN 459
+ + I L I ++ S +GN+ C A + N++ F+ FE+ AQ AI
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIE 203
Query: 460 GLNGCELEGCRIKV 501
+NG L ++ V
Sbjct: 204 KVNGMLLSDKKVYV 217
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 601 FPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
F +RLLV S GAIIG+ G I+ + + A V V
Sbjct: 33 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 68
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+R+LV GA+IGR GS I+ + ++ AR+ +
Sbjct: 110 VRMLVHQSHAGALIGRNGSKIKELREKCSARLKI 143
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 610 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD 720
++ + SD+ G IIGR G I I Q+S A++ + + +
Sbjct: 303 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN 339
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 601 FPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
F +RLLV S GAIIG+ G I+ + + A V V
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 601 FPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
F +RLLV S GAIIG+ G I+ + + A V V
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 708
+R+LV GA+IGR GS I+ + ++ AR+ +
Sbjct: 127 VRMLVHQSHAGALIGRNGSKIKELREKCSARLKI 160
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 610 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD 720
++ + SD+ G IIGR G I I Q+S A++ + + +
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN 356
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 280 RSSKVLISGLPLHIRFDNIEPLLSQYGNV--QHCDKANTRDPNTQAVFITFESPEQAQQA 453
+ S + +SG+P + +E + +G + N + F+ F+ ++A A
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVA 185
Query: 454 INGLNGCELEGC 489
I LNG GC
Sbjct: 186 IKTLNGSIPSGC 197
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 286 SKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNT-QAV---FITFESPEQAQQA 453
+ ++I+ LP + + + L + G ++ C RD T Q++ F+ + E A +A
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLV--RDKVTGQSLGYGFVNYVREEDALRA 99
Query: 454 INGLNGCELEGCRIKVEAA 510
++ NG L+ IKV A
Sbjct: 100 VSSFNGLRLQNKTIKVSYA 118
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 259 LKMAKFRRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA--VFITFES 432
+K AK R + KV + GLP ++ Q+G V + + + FI FE
Sbjct: 101 VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160
Query: 433 PEQAQQA 453
E A +A
Sbjct: 161 EESADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 259 LKMAKFRRSSKVLISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA--VFITFES 432
+K AK R + KV + GLP ++ Q+G V + + + FI FE
Sbjct: 101 VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160
Query: 433 PEQAQQA 453
E A +A
Sbjct: 161 EESADKA 167
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVEAAEQ 516
F+T ++P+ A +A NG +EG R++V A Q
Sbjct: 25 FVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQ 58
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 289 KVLISGLPLHIRFDNIEPLLSQY-GNVQHCDKANTRDPNTQAVFITFESPEQAQQAINGL 465
++ I +P I F + +L + G+V+ + D ++TFE+PE AQ+AIN +
Sbjct: 28 RIHIKNIPTFIGFKQFKKVLEKILGDVKSKKVRHMSD----YAYVTFETPEDAQKAINLV 83
Query: 466 NG 471
+G
Sbjct: 84 DG 85
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHR 714
+++L+ S+ VGAIIG+ G +R + + RV + +
Sbjct: 44 IKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSK 79
>U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical
protein T10E9.7a protein.
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 598 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD 720
++P+ + S ++G IG +GS I I + ++ +D+ + D
Sbjct: 7 NYPIHRFLDSSLLGQFIGPEGSNIYKIEKYNKVALDIWKND 47
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 613 LLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNV 726
+L+ + G +IGR G TIR I ++S A ++ R ++
Sbjct: 415 MLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSI 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 607 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDN 723
L++ V VGAI+G QGS I+ I+ ++ ++ D+
Sbjct: 333 LQVKVPRSTVGAIMGLQGSNIKKISNETETKIQFMPDDD 371
>U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical
protein T02G5.13a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQAVFITFESPEQAQQA 453
++G+ + FDN LL QY V D DPN Q +F + S +A A
Sbjct: 35 VTGVQKSMPFDN---LLEQYSRVHWDDSVTYDDPNVQKLFKSLMSGSRAALA 83
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 298 ISGLPLHIRFDNIEPLLSQYGNVQHCDKANTRDPNTQA--VFITFESPEQAQQAINGLNG 471
++ LP + D + L + G V A + F+TFES + A +AI LN
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 472 CELEGCRIKVE 504
+ +KVE
Sbjct: 240 IRMYHMVLKVE 250
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVE 504
F+++E+ + A AI+ +NG ++ R+KV+
Sbjct: 380 FVSYENAQSATNAISAMNGFQIGSKRLKVQ 409
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVE 504
F+++E+ + A AI+ +NG ++ R+KV+
Sbjct: 544 FVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>U80444-9|AAO12448.1| 71|Caenorhabditis elegans Hypothetical
protein F26B1.2d protein.
Length = 71
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 601 FPLRLLVQSDMVGAIIGRQGSTIR 672
F +RLLV S GAIIG+ G I+
Sbjct: 33 FEVRLLVSSKSAGAIIGKGGENIK 56
>U80444-8|AAO12446.1| 67|Caenorhabditis elegans Hypothetical
protein F26B1.2b protein.
Length = 67
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 601 FPLRLLVQSDMVGAIIGRQGSTIR 672
F +RLLV S GAIIG+ G I+
Sbjct: 33 FEVRLLVSSKSAGAIIGKGGENIK 56
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVE 504
F+++E+ + A AI+ +NG ++ R+KV+
Sbjct: 544 FVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVE 504
F+++E+ + A AI+ +NG ++ R+KV+
Sbjct: 473 FVSYENAQSATNAISAMNGFQIGSKRLKVQ 502
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 415 FITFESPEQAQQAINGLNGCELEGCRIKVE 504
F+++E+ + A AI+ +NG ++ R+KV+
Sbjct: 544 FVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,356
Number of Sequences: 27780
Number of extensions: 325472
Number of successful extensions: 1020
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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