Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18n02f
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1141 + 9052511-9052573,9052626-9052928 33 0.36
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.47
08_02_1150 + 24709071-24710774 30 1.9
12_02_1060 - 25752181-25754229 29 3.3
11_01_0066 - 536281-537196,537397-537452 29 3.3
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 4.4
11_06_0156 + 20748472-20748951 29 5.8
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 5.8
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 5.8
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 7.6
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 28 7.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 7.6
>01_01_1141 + 9052511-9052573,9052626-9052928
Length = 121
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 660 RPHVWKQCDHCLHPLC*RL*RVAAPAAENSGGPLTIGSGGKPSTDR 797
+PH K+ + P RL AAPA +++GG +G GG+P+ R
Sbjct: 29 QPHGTKR--RPVEPASRRLPAAAAPARQSTGGSCEVGGGGRPARRR 72
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 308 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 183
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>08_02_1150 + 24709071-24710774
Length = 567
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 692 PPPSVLTALTGRSTCSGKLRR-PSHHRQ 772
PPP +L L GR SG LRR P+H R+
Sbjct: 3 PPPHLLPLLLGRLVVSGDLRRSPAHLRR 30
>12_02_1060 - 25752181-25754229
Length = 682
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 647 PTPSAPARLETM*SLPPPSVL----TALTGRSTCSGKLRRPS 760
P PS PAR+ LPP +A+TG ST SG + P+
Sbjct: 633 PPPSLPARMPVATFLPPIDAFGYTSSAVTGSSTSSGNIGVPN 674
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 569 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLPPPSVLTA 715
PAS PP + P + + S + P P +P T S PP + TA
Sbjct: 212 PASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTA 260
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 426 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 334
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 610 CWLPKQHRRSFRSRQPRPKY 551
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 205 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 384
A N GA A V+ + +GR S+ +L + + AA WR+RR Q AL
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104
Query: 385 IFS---GGTRVTTSNVQMHGSYNM 447
+ + GG+ TS + G M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 174 VSGFLGASKTLGP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 19
+ G + A K L P GD + + V + G + H + + YCCED H Y G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167
Query: 18 SLE 10
SLE
Sbjct: 168 SLE 170
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +1
Query: 244 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 423
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 424 QMHGSYNMDTLHNDVA 471
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 668 RLETM*SLPPPSVLTALTGRSTCSGKLRRPSHH 766
R ++ S PPP T TG + RRP HH
Sbjct: 12 RQDSRYSSPPPVASTVFTGHRHLTTHSRRPRHH 44
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 277 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 185
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,068,599
Number of Sequences: 37544
Number of extensions: 501971
Number of successful extensions: 2279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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