Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m23r
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.7  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   5.7  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   10.0 

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 394 LWNFYLFNFISQKLYRILNKGI 329
           L N YL NFI+QKL  ++++ I
Sbjct: 363 LTNNYLINFITQKLVELVHETI 384


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 405 EICLEKLSLIRRQYVLRFSPLFKSSTALTDS 497
           +I +++LS++ ++   +FSPLF+  + + DS
Sbjct: 378 KIIIDELSILDKELENKFSPLFQYRSDMFDS 408


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 481 VLDLNNGLNLSTYCLRIKDNFSKQISIIFLWNFYLFNFISQKLYRIL 341
           VL+  N L ++ + L + +  SKQ  IIF    +L   +   +YR L
Sbjct: 188 VLNAANTLGITRHTLSLINRRSKQDKIIFYCGAFLVFVLFYLIYRWL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,860
Number of Sequences: 5004
Number of extensions: 43181
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)