Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m23f
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0307 + 19433172-19433606 30 2.3
06_03_0130 + 17004387-17004713,17005114-17005119 29 3.0
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 29 3.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 29 4.0
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 29 4.0
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 29 4.0
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899... 29 4.0
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 28 6.9
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 28 9.2
09_06_0312 + 22235287-22235334,22235418-22235535,22235628-222356... 28 9.2
06_03_1310 + 29238644-29240260 28 9.2
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 9.2
04_04_0439 - 25207950-25209629 28 9.2
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 9.2
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 28 9.2
>06_03_0307 + 19433172-19433606
Length = 144
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 427 MTHKGLPSQPSCPPTTARPVSEDAVVAVVATQSYSPGW 314
+T + PS PS P T+ARP A AV A + + GW
Sbjct: 45 LTGQSAPS-PSAPATSARPSRPRARAAVTACPAAAVGW 81
>06_03_0130 + 17004387-17004713,17005114-17005119
Length = 110
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 135 KVPVEEDAPLGVEGGEASEGQAGVGSKAEALRNI 34
K E+AP+ V G E +G+AG+G + E + +
Sbjct: 26 KASAAEEAPVVVAGDEDDDGEAGLGLREEVKKQL 59
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 652 ALPTYKVS-PDAVLPPSTAPGGTLPLDADTHRRSSGLAHRTSIF 524
AL ++++ P LPP +A LP D H R +G H F
Sbjct: 897 ALRLHEIAFPSRTLPPGSADANALPNPGDYHWRKNGEVHLNDPF 940
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 649 LPTYKVSPDAVL-PPSTAPGGTLPLDADTHRRSSGLAHRTS 530
LP+ VSP+ + PPS P LP DA+ H ++ HR S
Sbjct: 384 LPSGDVSPEELQGPPSALPFRVLPWDAEVH--ATLFVHRVS 422
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 335 PIVLSRMVDYANLIHIRRFSVVNVIGYVRWLTLIRGS 225
P V+S D + IHIRR V N G+ WL+ I GS
Sbjct: 304 PSVVSHKDDILS-IHIRRGGVDNGQGHSNWLSTISGS 339
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 679 PGVTDSWYLALPTY-KVSPDAVL--PPSTAPGGTLPLDADTHRRSSG 548
PG T ++ ++ PT K SP A++ PP+TA ++ H+ SSG
Sbjct: 10 PGQTTTFVISQPTSSKSSPAAIVVRPPATASSSSMSHSQGFHQPSSG 56
>02_05_0445 +
29088216-29088362,29089161-29089386,29089903-29089976,
29090129-29090353
Length = 223
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -2
Query: 165 GTGGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEALRN 37
GTG EE VP E DA LG GG+ QA EA N
Sbjct: 5 GTGSSWEEELGVPEESDAILGGGGGDGQRRQATRWELVEARLN 47
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 657 YQLSVTPGKVHPSHKTCYIGFGGT 728
Y S+ P + HPSH + + FGG+
Sbjct: 189 YPASMAPNQFHPSHCSSFPAFGGS 212
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 160 RTLTTFPGLLWSQYQCRCHQCLEPR 234
+T+ G +WS RC CL+PR
Sbjct: 251 QTIQRIAGFVWSTQLLRCIACLDPR 275
>09_06_0312 +
22235287-22235334,22235418-22235535,22235628-22235698,
22235799-22235855,22236271-22236362,22236604-22236651,
22237397-22237517,22237596-22237642,22237796-22237877,
22238526-22238611,22238864-22238938,22239018-22239171
Length = 332
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 640 YKVSPDAVLPPSTAPGGTLPLDADTHRRSSGL 545
Y + AVLP PG LP + H R +GL
Sbjct: 26 YLAAAGAVLPGKLVPGAVLPDSSRLHYRCNGL 57
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 646 PTYKVSPDAVLPPSTAP 596
PTY SP + +PPST+P
Sbjct: 414 PTYSESPKSSMPPSTSP 430
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 195 GP*QSRERSKGT-GGVD*EERKVPVEEDAPLGVEGGEASEGQAGVGSKAEAL 43
GP + R RS G+ GG +RK ++ E E +E +AG ++ E++
Sbjct: 116 GPSKRRVRSSGSAGGRGARKRKEAEADEEEAEAEAEEEAEAEAGTPARGESM 167
>04_04_0439 - 25207950-25209629
Length = 559
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 664 SWYLALPTYKVSPDAVLPPSTAPGGTLPL 578
SWYL K + DA L S P G LPL
Sbjct: 11 SWYLITVKLKETVDANLNKSAPPPGALPL 39
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 406 SQPSCPPTTARPVSEDAVVAV 344
S PS PP A P S D VVAV
Sbjct: 26 SSPSPPPPAATPPSHDGVVAV 46
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 640 YKVSPDAVLPPSTAPGGTLPLDADTHRRSSGL 545
Y + AVLP PG LP + H R +GL
Sbjct: 26 YLATAGAVLPGKLVPGAVLPDSSRLHYRCNGL 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,355,612
Number of Sequences: 37544
Number of extensions: 460819
Number of successful extensions: 1796
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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