Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m23f
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protei...    28   6.2  
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical
           protein M195.1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 120 EDAPLGVEGGEASEGQAGVGSKAEALRNIDSFC 22
           ED   G +G    +GQ G  + AEA+   D FC
Sbjct: 125 EDGRDGNDGQPGPDGQPGSDAPAEAIPTADDFC 157


>U42439-7|AAA83511.1|  304|Caenorhabditis elegans Collagen protein
           110 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 171 SKGTGGVD*EERKVPVEEDAPLGVEGGEASEGQAG 67
           +KG  G D E  +V   +  P G +G E   G+AG
Sbjct: 199 TKGEDGADGEPGEVDTSDVGPPGDDGDEGQSGEAG 233


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 666 SVTPGKVHPSHKTCYIGF 719
           S TPGK+ P++ TC +GF
Sbjct: 91  SSTPGKIPPNNITCAVGF 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,781
Number of Sequences: 27780
Number of extensions: 350921
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)