Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m23f
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 652 ALPTYKVSPDAVLPPSTAPGGTLPLDADTH 563
           A P       A+   S  PG +LP+D D +
Sbjct: 36  AFPNGYAKLAAIKSGSYIPGASLPIDVDVY 65


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 255  ITNYIYHGESSNVDQVS 305
            ++++IYHG SS    +S
Sbjct: 1814 VSDFIYHGTSSTSSDIS 1830


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 255  ITNYIYHGESSNVDQVS 305
            ++++IYHG SS    +S
Sbjct: 1810 VSDFIYHGTSSTSSDIS 1826


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = +2

Query: 89  SPPSTPRGAXXXXXXXXXXXXXPPVPLLRSRDCYGPSTSADATNVWSPGSRSANVHNQLH 268
           SP S   GA             PP+PL    +    S  A    V SP  RS    +   
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSR 479

Query: 269 LPRRI 283
            P  I
Sbjct: 480 CPPEI 484


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = +2

Query: 89  SPPSTPRGAXXXXXXXXXXXXXPPVPLLRSRDCYGPSTSADATNVWSPGSRSANVHNQLH 268
           SP S   GA             PP+PL    +    S  A    V SP  RS    +   
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSR 479

Query: 269 LPRRI 283
            P  I
Sbjct: 480 CPPEI 484


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 65  TPACPSLASPPS 100
           TPA P+L++PP+
Sbjct: 25  TPASPTLSTPPT 36


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -2

Query: 255 CTLADLDPGLQT-LVAS 208
           CTL  LDPG  T LVAS
Sbjct: 46  CTLRVLDPGAITGLVAS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,187
Number of Sequences: 438
Number of extensions: 4574
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)