Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m22r
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    56   6e-09
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   3.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   7.6  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
 Frame = -3

Query: 775 NHDNNRMPTRFRHDMVDGLNIINMLLP-------GVAVTYQGEEIGMRDGYVSW--EDTV 623
           NHD  R  +R+  D        + L+        G    +QG+E+ + +    W  ++ +
Sbjct: 344 NHDQTRTVSRYLSDSPKYRAYSSKLMALFIIFQSGTPFVFQGQELALANIPRDWPIDEYL 403

Query: 622 DIEACN------RGDP---------DTYHLYSRDPARTPYHWDNSTSAGFS-TSTNTWLP 491
           D+E  N       G+P         D  +  +RD  RTP HWD+S + GF+      W+ 
Sbjct: 404 DVETQNFWKLFMSGNPSQEEIEKTMDIVNKRARDNGRTPMHWDSSPNGGFTKAGVKPWMR 463

Query: 490 VAEDYQEINLAKQKETARSHFKNYQALTKLRKQA--TLSHGEYDIRALSDRTFY-LVRSL 320
           V  DY+E N A Q     S +  +    +LRK+    + +G +++ +  D +    VR  
Sbjct: 464 VTNDYKEWNAANQVNDPESPYTFWSKALELRKELKDAVVYGSFELISEEDPSIVAFVRES 523

Query: 319 PTHDTYVLL 293
            T+   +LL
Sbjct: 524 STYKLIILL 532


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 724 GLNIINMLLPGVAVTYQGEEIGMR 653
           GL ++++L+PG+ + Y GEE  ++
Sbjct: 489 GLFVVHLLMPGIPLIYYGEEQNLK 512


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 383 LSRRVRH*GPIRQDLLPREKFTYSR--HIRSS 294
           L+RR++    IR D+LPR+ F + R  H++SS
Sbjct: 70  LTRRLQQ---IRHDILPRQPFRFQRALHVKSS 98


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 20  LFTIIYILVTATINYFKYNILYEKRNPYHNT 112
           +F +IY ++   +  +KY ++Y+  +P H+T
Sbjct: 657 VFGLIYFIIGFLV--YKYELIYQMEHPQHST 685


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 733 MVDGLNIINMLLPGVAVTYQGEEIGM 656
           ++ G  I ++L PG+ + Y G+E GM
Sbjct: 477 LILGTMITSLLFPGIPLLYYGDEQGM 502


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 629 VFPADIAVSHADLLALVRDSY 691
           +FP D  +S A LL+L+R  Y
Sbjct: 159 LFPRDAFISQASLLSLIRHEY 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,095
Number of Sequences: 5004
Number of extensions: 69495
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)