Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m22f
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    54   9e-08
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    52   5e-07
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical
           protein T04A8.7b protein.
          Length = 606

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +2

Query: 275 GVDAIWMSPIFESPM-VDFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPN 451
           G +AI +  + E      FGY +SNF+ +    GT ED + L+DKAH LG+ +LLD V +
Sbjct: 137 GYNAIQLMAVMEHVYYASFGYQVSNFFAVSSRCGTPEDLKYLVDKAHSLGIFMLLDVVHS 196

Query: 452 HASNESE 472
           HAS   E
Sbjct: 197 HASKNVE 203


>Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical
           protein T04A8.7a protein.
          Length = 681

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +2

Query: 275 GVDAIWMSPIFESPM-VDFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPN 451
           G +AI +  + E      FGY +SNF+ +    GT ED + L+DKAH LG+ +LLD V +
Sbjct: 212 GYNAIQLMAVMEHVYYASFGYQVSNFFAVSSRCGTPEDLKYLVDKAHSLGIFMLLDVVHS 271

Query: 452 HASNESE 472
           HAS   E
Sbjct: 272 HASKNVE 278


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
 Frame = +2

Query: 23  RATKVVVLVVGSIALLGLVAGFITWVVLSNQNAPTPPPTEVIQLDWWKNCVLYQIYPRSF 202
           +  + ++ V+  +A + + AG I  VVLS + A    P      DWW+  V YQ+   +F
Sbjct: 59  KPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCAEKQKP------DWWQTKVSYQLLTATF 112

Query: 203 XXXXXXXXXXXXXXXXELKHFVDAGVDAIWMSPIFESPMVDF--GYDISNFYDIHYEYGT 376
                           ++      GV  ++ +P+ +    ++   YD+ +   +   +GT
Sbjct: 113 YDSDNDGVGDFAGISQKIDFLRKIGVTTVYPTPVIKIHKDEYFNSYDVVDHNSVDERFGT 172

Query: 377 MEDFEELLDKAHELGLKVLLDFV--------PNHASNESEYFIKSEAREPGY--ENF--F 520
            E F+EL+D  H   + +++D          P   S +   F+ ++  +PG+   NF  F
Sbjct: 173 EEQFKELIDTVHNRAMYLVMDLPVSTIDLSHPWFESRDESKFVIAKPTDPGFNESNFYPF 232

Query: 521 IWADPLPNPENPGVRLPPSNW 583
             A+ +     P  + P  NW
Sbjct: 233 HGANNIKYLGYPSSQNPVLNW 253


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
 Frame = +2

Query: 134 PTEVIQL--DWWKNCVLYQIYPRSFXXXXXXXXXXXXXXXXELKHFVDAGVDAIWMSPIF 307
           PT V++   +WW+  V Y ++  SF                 L     +GV  +W SP  
Sbjct: 123 PTCVLRAKPNWWQTAVAYHVWVPSFQDSDGDGVGDVDGLINRLDQLRKSGVQTVWPSPFL 182

Query: 308 ESPMVDFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPNHASNESEYFIKS 487
            S   D    + +F  +  + G  +  +EL++K HE  + +++ F     S E E+F+ S
Sbjct: 183 ISD--DEKTAVRSFSQMDPKIGVNQKADELINKIHEKEMNIVISFPIATTSLEHEWFLNS 240

Query: 488 --EAREP--GYENFFIW 526
              ++ P   Y  F+ W
Sbjct: 241 ATASKTPNANYSQFYTW 257


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 110  NQNAPTPPPTEVIQLDWWK 166
            NQ AP PPP   I +DW K
Sbjct: 1935 NQAAPPPPPQMSIDVDWSK 1953


>Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK678.2 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 460 AGMIRNEVEQNFQTKFMSFI*KLFKVLHSAILVVYIVEVTDVVPKVDHGGFEYRRHPNSI 281
           AGM  N  +QNF  K    I  L + LH   L    +  +  V + D   +E  + P+ I
Sbjct: 76  AGMTLNSTDQNFNMKTSDRIYDLIQNLHHLNLTRMTLASSHCVSQTDPSIYEIAQLPSKI 135


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 99  THVMNPATSPSKAIDPTTRTTTLVALMVAA 10
           T   +  T P+ A DPTT TTT  A  V +
Sbjct: 221 TTTTSTTTEPTTATDPTTTTTTTEATTVTS 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,986
Number of Sequences: 27780
Number of extensions: 334584
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)