Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m15r
         (871 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              34   0.77 
AJ298319-1|CAC83676.1|  372|Homo sapiens mucin 5 protein.              31   7.2  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 1/133 (0%)
 Frame = -1

Query: 844  TAQADXKQTETQKNTEPLQNSQVSL-RTAINSAPIATGQTTSTVESNKEKDTDVKVAVGA 668
            T Q     + T   T   Q S  S   T+  SAP  +  +  T  +     T +  A  +
Sbjct: 778  TPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTS 837

Query: 667  TTAETKSGGVDKSXXXXXXXXXXXXXXXITIKKNWSSIRNRFSSSPRAANERSATTANGT 488
            +T    +     S                T     SS  +   +S  +A   S T+ +GT
Sbjct: 838  STTSAPTA----STISAPTTSTTSFHTTSTTSPPTSSTSSTPQTSKTSAATSSTTSGSGT 893

Query: 487  TPEEVPLQEKSPV 449
            TP  VP    + V
Sbjct: 894  TPSPVPTTSTASV 906



 Score = 33.1 bits (72), Expect = 1.3
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 2/128 (1%)
 Frame = -1

Query: 847  KTAQADXKQTETQKNTEPLQNSQVSLRTAINSAPIATGQTTSTVESNKEKDTDVKVAVGA 668
            +T+      T T   + P   S  +  T        T   T    S     T +      
Sbjct: 1078 QTSTTSAPTTSTIPASTPSTTSAPTTSTTSAPTTSTTSAPTHRTTSGPTTSTTLAPTTST 1137

Query: 667  TTAETKS--GGVDKSXXXXXXXXXXXXXXXITIKKNWSSIRNRFSSSPRAANERSATTAN 494
            T+A T S       S                TI    SS  +   +S  +A   S T+ +
Sbjct: 1138 TSAPTTSTNSAPTTSTISASTTSTISAPTTSTISSPTSSTTSTPQTSKTSAATSSTTSGS 1197

Query: 493  GTTPEEVP 470
            GTTP  VP
Sbjct: 1198 GTTPSPVP 1205


>AJ298319-1|CAC83676.1|  372|Homo sapiens mucin 5 protein.
          Length = 372

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 31/122 (25%), Positives = 40/122 (32%)
 Frame = -1

Query: 814 TQKNTEPLQNSQVSLRTAINSAPIATGQTTSTVESNKEKDTDVKVAVGATTAETKSGGVD 635
           T   T     S  S  TA  S     G T S V +             A+TA T SG   
Sbjct: 65  TTSTTSAPTTSTTSASTA--STTSGPGTTPSPVPTTSTTSAPTTSTTSASTASTTSGP-G 121

Query: 634 KSXXXXXXXXXXXXXXXITIKKNWSSIRNRFSSSPRAANERSATTANGTTPEEVPLQEKS 455
            S                T     ++     ++S  +A   S T+  GTTP  VP    +
Sbjct: 122 TSLSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTT 181

Query: 454 PV 449
           PV
Sbjct: 182 PV 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,945,162
Number of Sequences: 237096
Number of extensions: 1880761
Number of successful extensions: 3658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3650
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)