Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m15f
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.3  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   1.7  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   9.3  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +1

Query: 466 LTEFPTPLDVRTT--ILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPG 639
           L EFP  L    +  IL++  NK+  +P+   +             +  L    ++ +P 
Sbjct: 87  LREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPT-YIAHMPN 145

Query: 640 LTVLKLGNNRLIEYPQDLKN 699
           L +LK+ NN ++  P  + N
Sbjct: 146 LEILKIENNHIVFPPPHIAN 165


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 613 LGSVSELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDI 750
           L  +  L GL  L   NNR+ E      N   L +LEEL LG N+I
Sbjct: 705 LDGIQHLDGLLKLSACNNRIKELSFTNSN---LHRLEELLLGNNEI 747


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 656 SFKTVKPGSSLTEPKSKPMI 597
           SF T KP SS  E K KP++
Sbjct: 179 SFVTEKPASSEKEDKEKPLV 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,153
Number of Sequences: 5004
Number of extensions: 55620
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)