Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m14r
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.14 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 241 GYIGS-GPPQGTGIHRYVYIL--YKQPGKLDFDEKRLTNTSIDGRASFSTKKF 92
           GY+    P Q   IHR VY    Y+QP + D   KR+TN   +G    S  KF
Sbjct: 326 GYVKPISPEQEELIHRLVYFQNEYEQPSEEDL--KRITNQPSEGE-DISDYKF 375


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 424 TPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGNI 278
           TP  ++   S+    +  A   L+ +DP        VY +W HW   N+
Sbjct: 829 TPNLLRYFASIATNPKEQAQLNLLASDP-------AVYEDWRHWKFPNL 870


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 45  ERSSTTMSHSLQKLA 1
           E SSTTMS++L +LA
Sbjct: 307 ETSSTTMSNALYELA 321


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 302 PFTVDQLRSIVVIRVREHERIKSISLGLKSDR 397
           PF VDQ R +  + V  ++ + S SL + S++
Sbjct: 70  PFDVDQWRGMTFVTVPRYKGVPS-SLNVISEK 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,398
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)