Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m14f
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 31 0.18
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 29 0.72
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 28 0.95
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 1.7
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.8
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 3.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 5.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 6.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 8.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 8.9
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 162 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 311
E P K E E D + VFTDPD D +Y H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 209 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 117
LK D RL++H C S ISL+R V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 FWRS-YRHDVLIMSLVAQAFEASKIVPD 89
FW+S YR D+LI +L FE+ IVPD
Sbjct: 122 FWKSQYRSDILINNLTETLFES--IVPD 147
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 170 SQLISLRRYSTARVFKLNVLSWSDGNNIRHYFASFECLCY 51
S++ L Y L +L W + NN+R F ECLC+
Sbjct: 263 SRMDELSNYERIEQLALYLLCWGEANNVR--FMP-ECLCF 299
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 87 DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 185
D+I TK +E+ +P GA LTP VK
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 364 PDHPRVLGSIVMSTSFINNQENWTSTRKG*RTRLLMVAPRSPRRSSLKSTTWGRLSPATS 543
P+ P + + ST N+E+WT+ +G ++ A SP S + A+
Sbjct: 422 PEKPALPDATSSSTPTTENKESWTN--QGIKSSQQRSANASPATSPSNQAS----IHASF 475
Query: 544 TERSSTTMSHSFT 582
T+ SST S SFT
Sbjct: 476 TKESSTHSSPSFT 488
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 3.8
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 51 VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 227
VAQ + + PD + VA +N EL++ S GNELT P T + + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388
Query: 228 YTLVFTDPDN 257
+ +V T+ D+
Sbjct: 389 WLVVTTNDDS 398
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 5.1
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Frame = +3
Query: 291 HHWLVGNIPGGDVSAGETL--SGYIGSGPPQGTGIHRY-VYIL----YKQPGKLDFDEKR 449
H V PG +G + G +G G G+ Y V L YKQP +LD +
Sbjct: 303 HPTAVSPFPGAATGSGGEIRDEGAVGQGSLSKAGLAGYSVSDLNIPGYKQPWELDVGKPY 362
Query: 450 LTNTSIDGRASFSTKKFAEKYNLGAPVAGNFYR 548
TS+D A G P ++R
Sbjct: 363 HIATSLDIMLEAPIGSSAFNNEFGRPCINGYFR 395
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 173 RSQLISLRRYSTARVFKLNVLSWSDGNNIR 84
RS + S+ ++ A+ L +L W + NN+R
Sbjct: 354 RSHMRSMTQFERAQQIALWLLLWGEANNVR 383
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 134 RVFKLNVLSWSDGNNIRHYFASFECLCY 51
R L +L W + NNIR F ECLC+
Sbjct: 337 RQLALYLLCWGEANNIR--FCP-ECLCF 361
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T+L +S + +NTS
Sbjct: 422 SSSILNSSTPITSSTVLNSSTPITSSTALNTS 453
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS ++L +S + ++NTS
Sbjct: 758 SSSILNSSTPITSSSVLNSSTPITSSTVVNTS 789
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T+L +S + +NTS
Sbjct: 950 SSSVLNSSTPITSSTVLNSSTPITSSTALNTS 981
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T++ +S + ++NTS
Sbjct: 1334 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTS 1365
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T+L +S + +NTS
Sbjct: 1622 SSSVLNSSTPITSSTVLNSSTPITSSTALNTS 1653
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T+L +S + +NTS
Sbjct: 1886 SSSVLNSSTPITSSTVLNSSTPITSSTALNTS 1917
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T+L +S + +NTS
Sbjct: 2078 SSSVLNSSTPITSSTVLNSSTPITSSTALNTS 2109
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 124 SSMFLVGATGITSGTILLASNACATKDMINTS 29
SS L +T ITS T++ +S + ++NTS
Sbjct: 2174 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTS 2205
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 314 NVSYEPVVPFTVDQLRSIVVIRVREHERIKSISLGLKSDRRLILHLCRSQLIS 156
N S P+ P T DQL + + + I+ +L L+S++ ++++ QL S
Sbjct: 184 NASRSPIAPLTEDQLSAREELPLSHFSHIE-WNLHLRSNKSIVVNNFVGQLCS 235
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 368 SGADVSR*SLSSRNVTTRNVSYEP 297
SG++ SR + SSR+ TR+V YEP
Sbjct: 270 SGSNFSR-ATSSRSSKTRSVVYEP 292
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 529 TGAPRLYFSANFFVENEARPSIDVFVSLFS 440
TGAP L S+N + E RPS+ LF+
Sbjct: 77 TGAPSLPTSSNNTQQAEERPSMPALGGLFA 106
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 54 AQAFEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPS 197
A+ + S +VP A K P+ A+ G PT K QP+
Sbjct: 421 AETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPA 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,598
Number of Sequences: 5004
Number of extensions: 55347
Number of successful extensions: 306
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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