Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m14f
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical ... 213 9e-56
AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical ... 212 2e-55
AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical ... 95 4e-20
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 66 2e-11
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 31 0.67
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 31 0.67
U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical pr... 31 0.88
AC006768-2|AAF60574.1| 309|Caenorhabditis elegans Hypothetical ... 29 2.0
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 2.7
U41030-1|AAA82362.2| 371|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z74042-7|CAA98532.1| 155|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 6.2
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 28 6.2
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 28 6.2
AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical
protein F40A3.3a protein.
Length = 221
Score = 213 bits (520), Expect = 9e-56
Identities = 99/188 (52%), Positives = 131/188 (69%), Gaps = 2/188 (1%)
Frame = +3
Query: 39 IMSLVAQAFEASKIVPDVIPV-APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAE 215
+ ++ A+AF +++PDV+ P+K + +K+ SG A+ GN LTPTQVKD P V ++AE
Sbjct: 34 LATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAE 93
Query: 216 ADAFYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGDVSAGETLSGYIGSGPPQGTGIHR 395
A YTL+ TDPD E YREWHHWLV NIPG D++ G+TLS YIG+GPP TG+HR
Sbjct: 94 PGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHR 153
Query: 396 YVYILYKQPGKL-DFDEKRLTNTSIDGRASFSTKKFAEKYNLGAPVAGNFYRAQFDDYVP 572
YVY++YKQ G++ D + RLTNTS D R + F K+ LGAPV GN ++A++DDYVP
Sbjct: 154 YVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYVP 213
Query: 573 QLYKSLGA 596
L K LGA
Sbjct: 214 ILNKQLGA 221
>AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical
protein F40A3.3b protein.
Length = 185
Score = 212 bits (518), Expect = 2e-55
Identities = 99/185 (53%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
Frame = +3
Query: 48 LVAQAFEASKIVPDVIPV-APTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADA 224
+ A+AF +++PDV+ P+K + +K+ SG A+ GN LTPTQVKD P V ++AE A
Sbjct: 1 MAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGA 60
Query: 225 FYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGDVSAGETLSGYIGSGPPQGTGIHRYVY 404
YTL+ TDPD E YREWHHWLV NIPG D++ G+TLS YIG+GPP TG+HRYVY
Sbjct: 61 LYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVY 120
Query: 405 ILYKQPGKL-DFDEKRLTNTSIDGRASFSTKKFAEKYNLGAPVAGNFYRAQFDDYVPQLY 581
++YKQ G++ D + RLTNTS D R + F K+ LGAPV GN ++A++DDYVP L
Sbjct: 121 LIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYVPILN 180
Query: 582 KSLGA 596
K LGA
Sbjct: 181 KQLGA 185
>AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical
protein Y69E1A.5 protein.
Length = 172
Score = 95.1 bits (226), Expect = 4e-20
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Frame = +3
Query: 42 MSLVAQAFEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFE-AEA 218
MS ++ AF +I P +I AP + + L + G G + +K+ P A+
Sbjct: 1 MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAPRWALPGADP 59
Query: 219 DAFYTLVFTDPDNYDGPELVYREWHHWLVGNIPGGD----VSAGETLSGYIGSGPPQGTG 386
++ YT++ DPDN EW HWLV NIP + ++ G+ Y P T
Sbjct: 60 ESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPRTD 119
Query: 387 IHRYVYILYKQPGKLDFDEKRLTNTSIDGRASFSTKKFAEKYNLGAPVAGNFYRAQFD 560
+HRYV ++++ G +R++ RA F+ K+F EK LG P+AGNF+ AQ +
Sbjct: 120 LHRYVILMWEHAG------RRISVPKPSSRAKFNVKQFIEKNKLGDPIAGNFFLAQHE 171
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 66.1 bits (154), Expect = 2e-11
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Frame = +3
Query: 111 KNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADA--FYTLVFTDPDNYDGPELVYR 284
+N+++ + + + GN +T +P +T E+ + F TL+ + D
Sbjct: 155 QNLQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNG 214
Query: 285 EWHHWLVGNIPGGD-VSAGETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNT 461
E W++ NIP G+ +SAG + Y+ P GTG HR ++L++ +DF ++
Sbjct: 215 EIVQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF---QIQGN 271
Query: 462 SIDGRASFSTKKFAEKYNLGAPVAGNFYRAQFDDYVPQLYKSLG 593
S+D R +K + + P A F++ +D+ V LG
Sbjct: 272 SLDTRIHEISKFYKKHEATITPSAIRFFQTSYDNSVKMALHGLG 315
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 294 HWLVGNIPGGDVSA----GETLSGYIGSGPPQGTGIHRYVYILYKQPGKLDFDEKRLTNT 461
HWL +IP +++A G T + Y+ P + + H Y+++L QP + E
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLES-YCEG 433
Query: 462 SIDGRASFSTKKFAEKYNL 518
+ R F + F +++ L
Sbjct: 434 MCETRKKFRLELFKQQHGL 452
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 296
P+P+G P+PM+ + P +P PG FP+ Q
Sbjct: 430 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 463
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 296
P+P+G P+PM+ + P +P PG FP+ Q
Sbjct: 814 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 847
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 296
P+P+G P+PM+ + P +P PG FP+ Q
Sbjct: 793 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 826
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSP----PGMFPTSQ 296
P+P+G P+PM+ + P +P PG FP+ Q
Sbjct: 793 PMPYGQPQPMFQPQYQPTFAAPYPTFPGAFPSYQ 826
>U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical
protein C26B2.8 protein.
Length = 373
Score = 30.7 bits (66), Expect = 0.88
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%)
Frame = +3
Query: 63 FEASKIVPDVIPVAPTKNIELKYPSGAIASQGNELTP---TQVKDQP--SVTFEAEADAF 227
F ++IVP ++PVAP + + I S G ++ D P S E + +
Sbjct: 202 FRENRIVPRLLPVAPAYELIATFSDEQI-SMGQLFDADILDKLADPPVMSAGVELQDEKL 260
Query: 228 YTLVFTDPDNYDGPELVYREWHHWLVGNIPG--GDVSAGETLSGYIGSGPPQGT----GI 389
YT++ D + + WLV NI G + + PP T G+
Sbjct: 261 YTIILADATS---------KAVTWLVANIAAFDGQLEIHRRTKSAVSYQPPDSTDRPVGM 311
Query: 390 HRYVYILYKQPGKLDFDEKRLTNTSIDGRASFSTKKFAEKYNLGAP---VAGNFY 545
H + LY+Q + +K L ++D F+ ++ E+Y P +A FY
Sbjct: 312 HTMILALYEQND--TWTQKDLARIAMD---DFNFTEWLEEYAHVLPAQALAATFY 361
>AC006768-2|AAF60574.1| 309|Caenorhabditis elegans Hypothetical
protein Y45G12B.2a protein.
Length = 309
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 567 HSRRTALCRSCRRQAPPGCTFQRTSSWRTRRDHQ*TCSL 451
+ R +C C P C Q +W T +D+ CSL
Sbjct: 17 YEHRVNVCEFCLVDNHPNCVVQSYLTWLTDQDYDPNCSL 55
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 87 DVIPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAE--ADAFYTLVFTDPDNY 260
DV P PT N+ P ++ Q +E +P SV E E A + TLVFT+
Sbjct: 433 DVSP--PTSNVTQDSPK-EMSYQHSEPSPALPSPDASVPSEHERFARSPPTLVFTEQSTE 489
Query: 261 DGPELVYREWHH 296
D PE HH
Sbjct: 490 DAPESPNEVVHH 501
>U41030-1|AAA82362.2| 371|Caenorhabditis elegans Hypothetical
protein C44C1.2 protein.
Length = 371
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 285 EWHHWLVGNIPGGDVS-AGETLSGY-IGSGPPQGTGIHRYVYILYKQPGKLDFDEKRL 452
+W + + GG + AG GY G + RY+ +L + KL+FDEK +
Sbjct: 264 DWFESCIFYLGGGHKTLAGLNFYGYEFSKGNVEAITADRYLTLLKSEKSKLEFDEKSM 321
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSPPGMFP 305
P P GG + P R P PPGM P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSPPGMFP 305
P P GG + P R P PPGM P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>Z74042-7|CAA98532.1| 155|Caenorhabditis elegans Hypothetical
protein T11F9.8 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 537 CRRQAPPGCTFQRTSSWR 484
C ++A PG TFQ T +W+
Sbjct: 57 CSQRAEPGATFQATETWQ 74
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 388 IPVPWGGPEPMYPDRVSPAETSPPGMFP 305
+PVP P P YP PA PP +P
Sbjct: 92 VPVPAPPPAP-YPQHAVPAPAPPPAPYP 118
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSPPGMFP 305
P P GG + P R P PPGM P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 385 PVPWGGPEPMYPDRVSPAETSPPGMFP 305
P P GG + P R P PPGM P
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical
protein H06H21.8b protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 429 LDFDEKRLTNTSIDGRASFSTKKFAEKYNLGAPVAGNF 542
LD K LT S +G+A FS ++ +Y+L P + NF
Sbjct: 303 LDHYHKTLTELS-NGKAPFSMEELLHQYSLIYPFSSNF 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,525
Number of Sequences: 27780
Number of extensions: 330811
Number of successful extensions: 1177
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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