Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m11f
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 28 1.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 1.6
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 27 2.8
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 3.6
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 26 4.8
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 4.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.4
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 279 REEFMAKIKQGLMQKLNFNLGQNIDLSGLE---TAIKEAI 389
RE + KIKQG ++N LGQN D S + TA +EA+
Sbjct: 12 RERRLNKIKQGGASRINQILGQNSDDSQSDVRATASEEAV 51
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 241 PCNCSFVSPLSCPSGGMSIIFFKTVFMSILSTISDTF--SEKAPPKFSETVGFSTSSAI 71
P N VS + P+ G ++ F + +S SD+F S P KFS +TS+ I
Sbjct: 101 PSNSPAVSNMQPPTQGGQPLYPTNFFTTSVSASSDSFPNSPTVPSKFSLNPSVATSTNI 159
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -3
Query: 205 PSGGMSIIFFKTVFMSILSTISDTFSEKAPPKFSETVGFSTSSAIFFCCCIHTKTP 38
P+G + ++ + LS + F+ P F T GF + +F C K P
Sbjct: 70 PNGSWQVYLLSSLPLRSLSRVWGQFNRAHLPTFLRTPGFKLYAWVFGCNLSELKDP 125
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 346 TLICPAWRRPSRKLSYKSSIWSVLSW 423
TL+ W R +RK+ Y + + LSW
Sbjct: 371 TLLTSGWYRYARKIHYTADFFQSLSW 396
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 174 LKKMIDMPPEGQDNGETKEQLQGILEKIEAMSD 272
L K+ ++ +GQD E ++LQ I KIE D
Sbjct: 31 LDKLCNIYTQGQDENEDAKELQAIKIKIEWCKD 63
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 216 GETKEQLQGILEKI-EAMSDEEREEFMAKIK 305
G +EQ + E I E ++ +EREEF+A K
Sbjct: 495 GSEREQWESAFETIPEPLTKKEREEFLATCK 525
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = +3
Query: 81 EVEKPTVSLNLGG-AFSEKVSEIVDNMDI------KTVLKKMIDMPPEGQDNGETKEQLQ 239
EVEKPT+S +G +F +K+ ++ D +I + L+K +G D+ E E L+
Sbjct: 78 EVEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEV-ENLK 136
Query: 240 GILE 251
LE
Sbjct: 137 NDLE 140
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.4
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = +3
Query: 63 QKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKE---- 230
Q K E+++ N G + S + SEI DN ++ + K + E +E
Sbjct: 74 QDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEESEDEEVYDP 133
Query: 231 -QLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNFNLGQNIDLSGLET 371
+ +GI+ E+ SDE E + + + + +NI G ET
Sbjct: 134 ARGEGIISTSES-SDESDAESETEAQPEISELAGIEPEENIP-RGSET 179
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 226 FVSPLSCPS--GGMSIIFFKTVFMSILSTISDTFSE 125
F SP S S GG+S I + V +S+ + + D FS+
Sbjct: 693 FSSPFSSSSSRGGLSHISSRNVSISVPTVLQDVFSD 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,463
Number of Sequences: 5004
Number of extensions: 51773
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -