Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m11f
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0695 + 30990070-30990269,30990399-30990459,30990793-309910...    33   0.31 
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281...    30   2.2  
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827...    30   2.2  
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636     29   2.9  
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945           29   2.9  
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82...    29   2.9  
07_03_0253 + 15853307-15855220                                         29   5.0  
12_01_0929 - 9229172-9229483,9230009-9230359                           28   8.8  
04_01_0620 - 8151065-8151791,8152246-8152418                           28   8.8  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    28   8.8  

>02_05_0695 +
           30990070-30990269,30990399-30990459,30990793-30991001,
           30991295-30991382
          Length = 185

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +3

Query: 219 ETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNF 332
           +TKE +    E +   SD+E+E+F  ++++G +Q+ N+
Sbjct: 126 KTKETMHETKEAVVGESDDEKEKFKQRVEEGSLQEFNW 163


>08_02_0919 -
           22627147-22627326,22627646-22627726,22627827-22628103,
           22629451-22629755,22629835-22629987,22630318-22631076
          Length = 584

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 123 FSEKVSEIVDNMDIKTVLKKMIDM--PPEGQD-NGETKEQLQGILEKIEAMSDEEREEFM 293
           F +  +E+ D  DI+T  ++ +D   P   Q  NGE+  QLQ + E++  +  EE E  M
Sbjct: 411 FVDLSAELSDLEDIQTSGRRSLDTVNPRRRQRLNGESVAQLQQLEEQLLELEKEEEEHHM 470

Query: 294 AKIK 305
            +++
Sbjct: 471 RRMQ 474


>08_02_0619 -
           19382172-19382366,19382453-19382545,19382621-19382702,
           19382793-19382903,19383323-19383681,19384330-19384533,
           19384582-19384756,19384885-19385474,19385555-19385800
          Length = 684

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
 Frame = +3

Query: 54  IQQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTV---LKKMIDMPPEGQ----- 209
           ++++KKM+D  +K        G  +E+   +VD  DI+ V   L++++     G+     
Sbjct: 261 LERRKKMSDLAKKNIYPHRTSGEVTEEGEMLVDCPDIQNVTTSLQQIVQKEKTGEFVPRR 320

Query: 210 DNGETKEQLQGILEKI--EAMSDEEREEFMAKIKQGLMQKLNFNLGQ 344
            + E  E L G  E    EA S ++R+ + AK++Q +  ++   + Q
Sbjct: 321 QHDELTEAL-GTAEHFGREAQSYKKRDAYKAKMRQEITDEVTQQVTQ 366


>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
          Length = 950

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 255 IEAMSDEEREEFMAKIKQGLMQKLNFNLGQNIDLSGLETAIKEAIVQKLYMV 410
           I A    E   +M +I +G++Q++      ++D   LE ++KE +  K Y++
Sbjct: 177 ITADGSPETSNWMKEILRGVLQQVRPGDAMDVDGQHLEASLKEYLKDKRYLI 228


>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
          Length = 493

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/65 (41%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 288 TLPFPRRTLLRFSLRSPAIAPSFHHCPVPRVACQSFSSKPSL--C-PYYQRSRTPFRRKR 118
           TLP  R  LLR  LR PA A  F   P P  A  S    P+L  C      SR P+   R
Sbjct: 87  TLPL-RLPLLRLWLRPPARAFLFLDGPAPAAAAASEPLPPNLRFCVSSTDASRFPYTHPR 145

Query: 117 RLSSA 103
            L SA
Sbjct: 146 GLPSA 150


>02_01_0110 +
           819022-819264,819996-820761,820846-820920,821276-821445,
           821644-821742,821835-822134,822211-822318,822443-822514,
           822580-822666,822887-822958,823063-823152,823795-823902,
           824015-824083,824177-824242,824395-824418
          Length = 782

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 33  IRGVFVCIQQQKKMADEVEKPTVSLNLGGAFSEKVSEI-VDNMDIKTVLKKMIDMPPEGQ 209
           + GV   IQQ +   DE   P+VS  +G     KV ++  +N  I   LK +   P  G 
Sbjct: 612 VEGVPALIQQWEVSWDETLDPSVSYKIGQVVDAKVIQLDYNNNRIFLSLKDVKPNPSVGA 671

Query: 210 DNGETKEQLQ--GILEKIEA 263
                 E+L   G LE  EA
Sbjct: 672 LEAVIGEELSLGGALEPAEA 691


>07_03_0253 + 15853307-15855220
          Length = 637

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 162 IKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDE 275
           I+ V   + DM PE  D G+T E    ++   +AMS++
Sbjct: 226 IEPVFHDLPDMMPEQADAGDTTETTAAVVNLTDAMSEQ 263


>12_01_0929 - 9229172-9229483,9230009-9230359
          Length = 220

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 PPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIK 305
           PP   D+  TKE+L      +   S EER+E + K +
Sbjct: 68  PPPSSDHSPTKEELPRATAAVGRYSAEERQERIEKYR 104


>04_01_0620 - 8151065-8151791,8152246-8152418
          Length = 299

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 198 PEGQDNGETKEQLQGILEKIEAMSDEER 281
           P+G++ GE +E+ + + EK+   + E+R
Sbjct: 79  PDGEEEGEEEEEAEAVAEKVTNEAAEDR 106


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = +3

Query: 63  QKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQG 242
           QK +    E  TVSL  GGA    VS IV   DI T  K   D      D G    ++  
Sbjct: 332 QKYIPSFTEHATVSLVTGGAIELPVSIIVGMGDIAT--KDAFDWALSYADAGRAFGEVSR 389

Query: 243 ILEKIEAMSDEEREE 287
            ++ + A+S   RE+
Sbjct: 390 FMDDL-AVSQNGREK 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,111
Number of Sequences: 37544
Number of extensions: 324766
Number of successful extensions: 1004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)