Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m11f
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 33 0.28
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 33 0.28
AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical ... 32 0.36
Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical... 31 1.1
Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical pr... 30 1.9
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 3.4
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 3.4
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 29 4.5
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 29 4.5
Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical p... 29 4.5
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 28 5.9
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 28 5.9
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 28 5.9
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 28 5.9
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 5.9
Z81587-3|CAB04700.1| 362|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81057-3|CAB02916.1| 168|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL021177-1|CAA15979.1| 83|Caenorhabditis elegans Hypothetical ... 28 7.8
AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical ... 28 7.8
AC199240-1|ABO33278.1| 427|Caenorhabditis elegans Hypothetical ... 28 7.8
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 28 7.8
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 201 EGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNF 332
E + E E+ Q + E +EAM++EER+++ + + QK F
Sbjct: 684 EARKAAEKAEKAQKMTEMLEAMTEEERQKYQDNVLYTIFQKTQF 727
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 201 EGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNF 332
E + E E+ Q + E +EAM++EER+++ + + QK F
Sbjct: 682 EARKAAEKAEKAQKMTEMLEAMTEEERQKYQDNVLYTIFQKTQF 725
>AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical
protein Y39H10B.2 protein.
Length = 232
Score = 32.3 bits (70), Expect = 0.36
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Frame = +3
Query: 54 IQQQKKMADEVEKPTVSL-NLGGAFSEKVSEIVDNMDIKTVLK---KMIDMPPEGQDNGE 221
I Q K +E ++ L + + +DN + +T+++ K+I+ + Q E
Sbjct: 83 ISQMKTQTEEFQRIVQELKDDADERRNRAQTSLDNSEYETLVQQRQKLIENSEKSQQ--E 140
Query: 222 TKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNFNLGQNID 353
TKEQL+ I+E D+ +E+F A Q +Q+ N + + +D
Sbjct: 141 TKEQLEKIVELQRKSCDQNKEKFTALELQ--LQETNERMQKQLD 182
>Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 362 LGDGHQGSYRTKALYGRCYRGVHSVLIACVLRLQTVQVDKGQRSQEGRKEK 514
LGDG G +R G + G+ S+LIAC + +V V G EK
Sbjct: 185 LGDGDGGGHRRILELGAGFLGLSSILIACKVPDSSVWVTDGNMESVRSLEK 235
>AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 362 LGDGHQGSYRTKALYGRCYRGVHSVLIACVLRLQTVQVDKGQRSQEGRKEK 514
LGDG G +R G + G+ S+LIAC + +V V G EK
Sbjct: 185 LGDGDGGGHRRILELGAGFLGLSSILIACKVPDSSVWVTDGNMESVRSLEK 235
>Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical
protein F56D5.6 protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.5
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = +3
Query: 54 IQQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMD-IKT-VLKKMIDMPPEGQDN-GET 224
+ + K ADEVEK + N SE+ S++ N D I T + + P + DN E
Sbjct: 237 VDESNKSADEVEKEVQTGNQDDGNSEQSSDLPKNRDRIDTDSAVEEVGEPEKNNDNVEEV 296
Query: 225 KEQLQGILEKIEAMSD--EEREEFMAKIKQGLMQK 323
E IL++ E + D E +F I + +M K
Sbjct: 297 NESGNVILDEDENIEDNVELARDFGKAIYENVMIK 331
>Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical
protein C08F8.6 protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 129 EKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREE 287
+K +VD + K + KK +++ EG+ + ETKE + E +E +E++EE
Sbjct: 312 KKKKGVVDQTE-KVIKKKEVELA-EGKSHKETKEVTKVSKEIVEEKKEEKKEE 362
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 54 IQQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNG 218
I Q K+ ADE K T S +GG V E++D+M+ +T MI M PE +G
Sbjct: 646 IDQLKEAADEANKYTWSDLVGGG----VVELIDSMEEET---SMIAMMPEDLRSG 693
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 54 IQQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNG 218
I Q K+ ADE K T S +GG V E++D+M+ +T MI M PE +G
Sbjct: 447 IDQLKEAADEANKYTWSDLVGGG----VVELIDSMEEET---SMIAMMPEDLRSG 494
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +3
Query: 150 DNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLN 329
DNMDIK K D P Q K L+ L+ I AM E + + + KL
Sbjct: 327 DNMDIKDEFKDEDDDPNAQQVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKL- 385
Query: 330 FNLGQNID 353
+NL Q D
Sbjct: 386 WNLDQKKD 393
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +3
Query: 150 DNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLN 329
DNMDIK K D P Q K L+ L+ I AM E + + + KL
Sbjct: 327 DNMDIKDEFKDEDDDPNAQQVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKL- 385
Query: 330 FNLGQNID 353
+NL Q D
Sbjct: 386 WNLDQKKD 393
>Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical
protein AH6.14 protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 235 NCS-FVSPLSCPSGGMSIIFFKTVFMSILSTISDTFSEKAPPKFSETVGFSTSSAIFFCC 59
NC+ ++ + +GGM IF +T M + TF + SE +GFS + +FFC
Sbjct: 100 NCAPYLKVILGTTGGM--IFAQTGLM--IERTCATFLASYRKRKSEIIGFSITIIVFFCS 155
Query: 58 CIHTK 44
I K
Sbjct: 156 SITGK 160
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 117 GAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREEFMA 296
G + ++ ++VD D +++K+++ E +D G + + +KI + E+ ++
Sbjct: 379 GDRTARIEDLVDEEDRGALVQKIMETKAEIEDGGGQDQVEESDADKIMTVEREKMKQLQE 438
Query: 297 KIKQGLMQKLNFNLGQNIDLSG--LETAIKE 383
K++ + + + L + D + +E+ IKE
Sbjct: 439 KLQD--LTRSAYPLARLFDFANDDIESMIKE 467
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 DIKTVLKKMIDMPPEGQDNGETKEQLQGILEK-IEAMSDEEREEFMAKIKQGLMQ-KLNF 332
+IKT+ +KM + E +++ + +EK + + EE+EE + K+G + +
Sbjct: 995 EIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKK 1054
Query: 333 NLGQNIDLSGLETAIKEAIVQKLY 404
L + ++ + KE V+ Y
Sbjct: 1055 RLFEMVEAKEKDAGEKEKTVKLCY 1078
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 DIKTVLKKMIDMPPEGQDNGETKEQLQGILEK-IEAMSDEEREEFMAKIKQGLMQ-KLNF 332
+IKT+ +KM + E +++ + +EK + + EE+EE + K+G + +
Sbjct: 753 EIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKK 812
Query: 333 NLGQNIDLSGLETAIKEAIVQKLY 404
L + ++ + KE V+ Y
Sbjct: 813 RLFEMVEAKEKDAGEKEKTVKLCY 836
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 DIKTVLKKMIDMPPEGQDNGETKEQLQGILEK-IEAMSDEEREEFMAKIKQGLMQ-KLNF 332
+IKT+ +KM + E +++ + +EK + + EE+EE + K+G + +
Sbjct: 995 EIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKK 1054
Query: 333 NLGQNIDLSGLETAIKEAIVQKLY 404
L + ++ + KE V+ Y
Sbjct: 1055 RLFEMVEAKEKDAGEKEKTVKLCY 1078
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 DIKTVLKKMIDMPPEGQDNGETKEQLQGILEK-IEAMSDEEREEFMAKIKQGLMQ-KLNF 332
+IKT+ +KM + E +++ + +EK + + EE+EE + K+G + +
Sbjct: 750 EIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKK 809
Query: 333 NLGQNIDLSGLETAIKEAIVQKLY 404
L + ++ + KE V+ Y
Sbjct: 810 RLFEMVEAKEKDAGEKEKTVKLCY 833
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 57 QQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMP 197
++ KK+ +EV+KP V N E V E ++ K KM++ P
Sbjct: 388 EEPKKVEEEVKKPEVPKNEEPKMEEPVKEEAPKVEEKKEEVKMVEDP 434
>Z81587-3|CAB04700.1| 362|Caenorhabditis elegans Hypothetical
protein T06G6.4 protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 207 QDNGETKEQLQGILEKIEAM-SDEEREEFMAKIK--QGLMQKLNFNL 338
++ GE K+Q+Q + EK+E + ++ AKIK + +++++ NL
Sbjct: 203 KEKGEMKKQIQELTEKVEKKGAGNIEDQLQAKIKDLEDVLRQMTLNL 249
>Z81057-3|CAB02916.1| 168|Caenorhabditis elegans Hypothetical
protein F10D11.4 protein.
Length = 168
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 129 EKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIKQ 308
EK + D D L K + + + Q+ K L+ +++E E R + K K+
Sbjct: 101 EKEVKKEDKPDNNEPLIKNLKIAKKEQEEENPKTDLESHDDEVETKKKESRRQKKKKSKE 160
Query: 309 GLMQKL 326
G M+K+
Sbjct: 161 GSMEKV 166
>AL021177-1|CAA15979.1| 83|Caenorhabditis elegans Hypothetical
protein Y1A5A.2 protein.
Length = 83
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 169 VFMSILSTISDTFSEKAPPKFSETVGFSTSSAIFFCCCI 53
+F+ S + D FS KA + S +V + CCCI
Sbjct: 14 LFVPPFSAVPDVFSAKALKRNSRSVSVVYETYTHTCCCI 52
>AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical
protein W03G9.7 protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +3
Query: 135 VSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDEEREE 287
+ + ++ ++ K VLKK + T EQL+ +L++++ ++ E+ +
Sbjct: 84 IEKAINRLERKNVLKKFESQTIYADNLKNTVEQLEAVLKELKKQTEREKTD 134
>AC199240-1|ABO33278.1| 427|Caenorhabditis elegans Hypothetical
protein 2L52.1 protein.
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 192 CQSFSSKPSLCPYYQRSRTPFRRKRRLSSARQSVSQLRPP 73
C S S+ P +R+ P R K+RLS+ R + +RPP
Sbjct: 223 CISTGKSASMVPSKRRN-WPKRVKKRLSTQRNNQKTIRPP 261
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 KIEAMSDEEREEFMAKIKQGL-MQKLNFNLGQNIDLSGLETAIKEAIV 392
K ++ DE++++F K+ + M+K N L G + A+KEA++
Sbjct: 88 KDDSDEDEDKKKFQDKLSGAIVMEKPNVKWTDIAGLEGAKEALKEAVI 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,450
Number of Sequences: 27780
Number of extensions: 292921
Number of successful extensions: 1003
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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