Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m11f
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 635 IF*MTIQSKVTYYTLNLL 582
           +F +T++ K  +YT+NL+
Sbjct: 227 VFNITLRRKTLFYTVNLI 244


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 133 FSEKAPPKFSETVGFSTSSAIFFCCCIHTKTPL 35
           F  KAP K    +G  +++   F C  +T+ P+
Sbjct: 61  FRFKAPQKIPAWIGELSATKFGFPCLQYTQLPV 93


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 175 KTVFMSILSTISDTFSEKAPPKFSETVGFSTSSAIFFCCCIH 50
           KTV     S I   F     PK S     +T++ + FC  IH
Sbjct: 536 KTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIH 577


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 133 FSEKAPPKFSETVGFSTSSAIFFCCCIHTKTPL 35
           F  KAP K    +G  +++   F C  +T+ P+
Sbjct: 61  FRFKAPQKIPAWIGELSATKFGFPCLQYTQLPV 93


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 TIVLSLGWHVNHFLQNRLYVHIINDL 141
           T+ L   +H NH+L  R  + I + L
Sbjct: 20  TLELEKEFHYNHYLTRRRRIEIAHAL 45


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 16  LRVLVQ*EVSLCVYNNKKKWRTKLRNRLSR*T*AALSPKRCPRSLIIW 159
           L+ L+  +    VYNN K+ R+  R R S  T +     R    L++W
Sbjct: 25  LKRLITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIHRKKVLLLVW 72


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 219 HHCPVPRVACQSFSS 175
           +HC + R AC S SS
Sbjct: 127 NHCELHRAACHSGSS 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,541
Number of Sequences: 438
Number of extensions: 3686
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)