Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m09r
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 66 5e-12
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 64 2e-11
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 58 2e-09
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 32 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.57
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 28 1.3
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 27 4.0
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 26 5.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 7.0
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 9.2
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 66.1 bits (154), Expect = 5e-12
Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Frame = -1
Query: 755 GEIMMRGRHVFMGYLNDAEKTKGAIDDDGWLLSGDVGRVDSNNLLYITGRIKELLITAGG 576
GEI +RG + GYLN ++ K + DGW +GDVG + LL I R K L+ T G
Sbjct: 484 GEIWLRGPSLTRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKKNLVKTQNG 543
Query: 575 ENVAPVLIEQAIQAELLHVGYAVLIGDRRKFLSVLLTLKTKVSPETGEP-LDELESEARK 399
E +A +E + L V + D+ K + + + EP + +L +E
Sbjct: 544 EYIALEKLESRYRTSSL-VSNICVYADQTKVKPLAIIV-------PNEPVVRKLATEQ-- 593
Query: 398 WVASLGSSATKLSEIVNSKDPAVHKAIEAGITRANK-HAISNAQKVQKFAILPSDFSVYT 222
A L A+ E+ ++K V + + + R + H +N + +Q ++P +F+
Sbjct: 594 --AGLSPDAS-WEEVCHNK--KVRQLVYDDLIRIGRSHHFANIELIQNVVLVPIEFTPEN 648
Query: 221 GELGPTLKIKRNVVYEKYKDIIEDFYKE 138
G + K++R + +++K I+ Y E
Sbjct: 649 GLVTAAQKLQRRKILDRFKKEIDAAYAE 676
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = -1
Query: 779 GSMSPNGP-GEIMMRGRHVFMGYLNDAEKTKGAIDDDGWLLSGDVGRVDSNNLLYITGRI 603
G+ P G GEI +RG +V GYLN+ K + D + +GD G++D + ++ITGRI
Sbjct: 345 GNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRI 404
Query: 602 KELLITAGGENVAPVLIEQAI 540
KE L+ GGE ++P I+ +
Sbjct: 405 KE-LVNRGGEKISPAEIDAVL 424
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 689
Score = 57.6 bits (133), Expect = 2e-09
Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 4/210 (1%)
Frame = -1
Query: 755 GEIMMRGRHVFMGYLNDAEKTKGAIDDDGWLLSGDVGRVDSNNLLYITGRIKELLITAGG 576
GE+ +RG V GYLN E K A +DGW +GDVG + N L + R K ++ + G
Sbjct: 491 GEVWIRGPAVCNGYLNRPEDNKAAFTEDGWFKTGDVGEIAKGNTLRLIDRKKNIVKSLNG 550
Query: 575 ENVAPVLIEQAIQAELLHVGYAVLIGDRRKFLSVLLTLKTKVSP-ETGEPLDELESEARK 399
E +A IE L V D V++ V+P E G ++
Sbjct: 551 EYIALEKIEAQFFTSPL-VSNVCAYADVNHAKPVVI-----VNPDENGLRTYLTKNSGSS 604
Query: 398 WVASLGSSATKLSEIVNSKDPAVHKAIEAGITRANKHAISNAQKVQKFAILPSDFSVYTG 219
+ + + T L KD V I + K + ++ + +L SDF +T
Sbjct: 605 FNGNPNDTLTNLC-----KDSGVQHLILKELINIGKQQRLASIEIPEGVVL-SDFE-WTA 657
Query: 218 E---LGPTLKIKRNVVYEKYKDIIEDFYKE 138
E L + K+KR V+ Y D I+ Y +
Sbjct: 658 ENNFLTASRKVKRQVIVAHYSDEIQKAYSK 687
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 31.9 bits (69), Expect = 0.11
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -1
Query: 761 GPGEIMMRGRHVFMGYLNDAEKT--KGAID---DDGWLLSGDVGR-VDSNNLLYITGRIK 600
G GEI M G V GYLN E+T K D +D +GD+GR + NN L GR
Sbjct: 3059 GLGEICMGGNQVAKGYLNLPEQTDAKFYFDRRFNDRIYHTGDLGRLLKDNNSLEFCGRTD 3118
Query: 599 ELLITAG 579
+ + G
Sbjct: 3119 DQIKLRG 3125
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.5 bits (63), Expect = 0.57
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = -1
Query: 470 LTLKTKVSPETGEPL--DELESEARKWVASLGSS--ATKLSEIVNSKDPAV---HKAIEA 312
L+L T +P + + D LES +K +S ++ A+ SEI+++KDP V H A A
Sbjct: 176 LSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNA 235
Query: 311 GITRAN 294
+ +N
Sbjct: 236 ANSGSN 241
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 473 LLTLKTKVSPETGEPLDELESEARKWVAS-LGSSATKLSEIVNSKDPAVHK 324
+L+ K+K PE L S A W++ G +LS + +P H+
Sbjct: 109 ILSAKSKAKPELLRTLTSKSSSAVDWLSERFGLQMDQLSRLAGHSEPRTHR 159
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 297 CACDTRLYSFVDRWVFTVNDFTEFSCGTAQTSNPLPRFTF 416
C+ T +S+ W F+ N F E+S +A ++ + +++
Sbjct: 123 CSASTNSHSYDCLWNFSCNSFPEYSSYSASETSSVASYSY 162
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 340 SLLLTISLSLVAELPKLATHFLASLSNSSKGSPVSGLTLVFRVNKTERNFRRSPMS 507
SLL T+ L F + +SNSS P++ T + NF+ +P S
Sbjct: 383 SLLGTVEAPAEVGAISLTESFNSPVSNSSPNVPINNFTSTCAFENSHLNFQITPKS 438
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 574 SPPAVISSSFILPVI*SRLFESTLPTSPES 663
+PP I+ P+I LFES TSP S
Sbjct: 118 TPPETIAKMVWFPLINHHLFESETDTSPGS 147
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 578 GENVAPVLIEQAIQAELLHVGYAVLIGDRRKFLSVLLTLKTKVSPETGEP 429
G N AP A+Q +L+ + VL + +K + VLL+L + + + P
Sbjct: 585 GNNTAPSSNSVALQLSILNGFWEVLTEELQKDVHVLLSLVSTLENQVNFP 634
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 713 LNDAEKTK-GAIDDDGWLLSGDVGRVD-SNNLLYITGRIKELLITAGGENV 567
LND +K + I + G D G+ + +LY TGRIK++ G +NV
Sbjct: 48 LNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNV 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,028
Number of Sequences: 5004
Number of extensions: 55459
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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