Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m09f
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    27   2.2  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   2.9  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.9  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    26   6.7  

>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 264 RDIQELLLCNFLRALLDP 211
           R I+E ++CNF R+++DP
Sbjct: 93  RSIKEGIICNFTRSIIDP 110


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 234 SYTTAIPGCHVKLRIAPRGLA--AEPPISVPGLLSRTTARYPNATA 365
           +Y T++P  +V     P  +    E   + P L+  TTA+YP A+A
Sbjct: 248 AYATSVPESYVAPMEPPAAVLPDGEERYATPDLVPDTTAQYPYASA 293


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 368 GHKKG*WEMAQNHLQAIPGS 427
           GH +G WE+A +HL+ I G+
Sbjct: 472 GHIEGVWEIAADHLRLISGA 491


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 109 SVLFLCSCTASMSVQCLVSLNYH 41
           +VL LCS  A  SV  ++S NYH
Sbjct: 161 AVLSLCSELARQSVNSVISGNYH 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,106
Number of Sequences: 5004
Number of extensions: 67659
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)