Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m09f
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558... 42 5e-04
05_03_0481 + 14556223-14556762,14556848-14556928,14559532-145597... 37 0.015
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 36 0.035
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 33 0.19
11_06_0086 + 19914234-19914382,19914590-19914653,19914793-199148... 33 0.32
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 32 0.57
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 31 0.99
12_01_0116 - 884400-884783,887864-888031,888285-888479,888668-88... 31 1.3
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013 30 1.7
11_01_0109 - 843748-843851,844655-844940,845390-845557,845812-84... 29 3.0
01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251 29 4.0
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 28 7.0
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 28 9.2
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522... 28 9.2
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 28 9.2
>01_06_0271 -
28055367-28055402,28055503-28055622,28055710-28055892,
28056006-28056145,28056347-28056595,28056706-28056823,
28056924-28056999,28057096-28057162,28057282-28057369,
28057506-28057616,28058127-28058221,28058305-28058344,
28058736-28058812,28058978-28059026,28059464-28059520,
28059624-28059713,28059833-28059896,28060076-28060245
Length = 609
Score = 41.9 bits (94), Expect = 5e-04
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Frame = +3
Query: 252 PGCHVKLRIAPRGLAAEPPISVPGL------LSRTTARYPNATALATKK-ADGKWHK--- 401
P R A G AA PP +VPGL T R P+ L ++ DGK K
Sbjct: 26 PSAGPAYRCAYGGGAASPP-AVPGLECCWDIFRMTVERCPDNKMLGRREIVDGKAGKYTW 84
Query: 402 ITYKQYQDRVRIIAKAFLKLGLDRYHSVSILGFNSEQWFIADLXXXXXXXXXXXXXTTNS 581
ITYK+ D V + + LG+ + I G N +W I+ T
Sbjct: 85 ITYKEAYDTVIKVGASIRSLGVGKGGRCGIYGANCPEWVISMQACNAHGIYCVPLYDTLG 144
Query: 582 ADACFHCLESSRANICAVQDKKQLDKILSVKHKLPLLKAIVQW-------EGPVDTSIPG 740
A A L + I +++KK + + + + LK IV + + V+ +
Sbjct: 145 AGAVEFILCHAEVEIAFIEEKKIGEVLKTFPNATKYLKTIVSFGKVNPEQKEKVEQNGVS 204
Query: 741 IYSWD 755
IYSW+
Sbjct: 205 IYSWE 209
>05_03_0481 +
14556223-14556762,14556848-14556928,14559532-14559798,
14559933-14559992,14560811-14560942,14561026-14561199,
14562769-14562919,14563651-14563790,14565656-14565787,
14565866-14566000,14566098-14566304,14567376-14567540
Length = 727
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = +3
Query: 387 GKWHKITYKQYQDRVRIIAKAFLKLGLDRYHSVSILGFNSEQWFIADLXXXXXXXXXXXX 566
G++ TY + R + +KLG R +I +W IA
Sbjct: 133 GEYEWDTYAEAFSRACNFSSGLIKLGHQRDSRAAIFADTRTEWIIAAQGCFRQNLTVVTI 192
Query: 567 XTTNSADACFHCLESSRANICAVQDKKQLDKILSVKHKLPLLKAIVQWEG-PVDTSI 734
+ DA H L ++ + + D KQL K+ ++ KL +K ++ E PV+ +
Sbjct: 193 YASLGEDALVHSLNETQVS-TLICDSKQLKKLPAISSKLQSVKHVIYIEDEPVEAEV 248
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 35.9 bits (79), Expect = 0.035
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Frame = +3
Query: 288 GLAAEPP--ISVPGLLSRTTARYPNATALATKKA--DGKWHK---ITYKQYQDRVRIIAK 446
GL PP S + + +YP++ L ++ DGK + +TYK+ D V +A
Sbjct: 28 GLLRPPPGVESCWDVFRNSVEKYPDSPMLGRRRVVDDGKAGEYVWMTYKEVYDVVMKLAA 87
Query: 447 AFLKLGLDRYHSVSILGFNSEQWFIADLXXXXXXXXXXXXXTTNSADACFHCLESSRANI 626
+ K G+ + S I G N +W I+ + A A + + I
Sbjct: 88 SISKSGISKGESCGIYGANCPEWIISMEACNALGVSCVPLYDSLGAGAVEFIVCHAEIQI 147
Query: 627 CAVQDKKQLDKILSVKHKLPLLKAIVQWEG 716
V+++K + + + LK I+ + G
Sbjct: 148 AFVEERKIAELLKTCHATSKYLKTIISFGG 177
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/121 (20%), Positives = 47/121 (38%)
Frame = +3
Query: 288 GLAAEPPISVPGLLSRTTARYPNATALATKKADGKWHKITYKQYQDRVRIIAKAFLKLGL 467
GL ++VP + +Y + AL + ++TYKQ + + ++ +G+
Sbjct: 93 GLTTHDWMAVPDIWRTAAEKYADRVALVDPYHEPP-SELTYKQLEQEILDFSQGLRAIGV 151
Query: 468 DRYHSVSILGFNSEQWFIADLXXXXXXXXXXXXXTTNSADACFHCLESSRANICAVQDKK 647
+++ NS +W +AD T +S + F S +I V D
Sbjct: 152 APDEKIALFADNSCRWLVADQGIMATGAINVVRGTRSSDEELFQIYTHSE-SIALVVDSP 210
Query: 648 Q 650
Q
Sbjct: 211 Q 211
>11_06_0086 +
19914234-19914382,19914590-19914653,19914793-19914882,
19915000-19915056,19915147-19915195,19915393-19915469,
19915686-19915725,19915813-19915907,19916007-19916171,
19916317-19916427,19916515-19916602,19916691-19916757,
19916822-19916939,19917022-19917139,19917398-19917643,
19917736-19917833,19917961-19918143,19918237-19918356,
19918515-19918565
Length = 661
Score = 32.7 bits (71), Expect = 0.32
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Frame = +3
Query: 330 SRTTARYPNATALATKK-ADGK---WHKITYKQYQDRVRIIAKAFLKLGLDRYHSVSILG 497
S +YP L +K +DGK + +TY++ +V I A L + I G
Sbjct: 50 SGAVKQYPKNKMLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYG 109
Query: 498 FNSEQWFIADLXXXXXXXXXXXXXTTNSADACFHCLESSRANICAVQDKKQLDKILSVKH 677
N +W +A T A+A ++ + +I VQ+ K + VK
Sbjct: 110 SNCPEWVMAMQACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKR 169
Query: 678 KLPLLKAIVQW 710
+KAIV +
Sbjct: 170 CRAHIKAIVSF 180
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 155 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGASY--ISAWIT 328
N ++ WS + + G S +NS++W S T SS +SY SAW +
Sbjct: 744 NNNGSNNAWSSTRDY--DNGGRSDNNPYYNSSTWSSNSTYSNNAAWSSNSSYNSNSAWSS 801
Query: 329 KSNYRQIS 352
S+Y S
Sbjct: 802 NSSYNSNS 809
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 31.1 bits (67), Expect = 0.99
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 222 VPAESYTTAIPGCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATALATKKADGKWHK 401
VPA Y G + LR P +A++P +S+ LL R P+A ALA A G+
Sbjct: 6 VPAAGY--GADGVYRSLR-PPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGR--A 60
Query: 402 ITYKQYQDRVRIIAKA 449
+T+ + + V A A
Sbjct: 61 LTFAELRSAVLSTAVA 76
>12_01_0116 -
884400-884783,887864-888031,888285-888479,888668-888793,
888900-889082,889633-889755
Length = 392
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 182 SQSTNILKRTGSSSARRKLHNSNSWMSRQT--SHRPPRLSSGASYISAWITK 331
++++NI++ T RRK NSNS+M + RPP LS + +A T+
Sbjct: 152 NKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAETAAQETQ 203
>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
Length = 829
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 148 VSVAPFSTVTVEFSVLFLCSCTASMSVQC-LVSLNYHKAHVLASG 17
VSV PF+T++ +S + C ++ + L+ L+YHK H+LA G
Sbjct: 534 VSVHPFTTIS-PYSSMHDEVCRLAVEKRTSLILLHYHKRHMLAGG 577
>11_01_0109 -
843748-843851,844655-844940,845390-845557,845812-846006,
846195-846320,846427-846589,847363-847388
Length = 355
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 182 SQSTNILKRTGSSSARRKLHNSNSWMSRQT--SHRPPRLSSGASYISAWITK 331
++++NI++ T RRK NSNS++ + RPP LS+ + +A T+
Sbjct: 113 NKTSNIIEETKKIQIRRKQANSNSYVPNLAFDTLRPPNLSNDQAETAAQETQ 164
>01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251
Length = 158
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 182 SQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPR-LSSGASYISAW 322
++ T L+ T + + RKL S SW ++ T PPR LSS ++ S+W
Sbjct: 31 ARGTPTLENTVPTPSSRKLEASASWANQST---PPRWLSSASAPPSSW 75
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 742 IPGMEVSTGPSHCTMAFNKGSLCFTERILSSCFLSCTAQMLARDDSRQWKHASAELVV 569
IP E+ TG +MA N S + L + +LS + + +DDS+ KH + + +
Sbjct: 676 IPCSEIHTGTLQKSMASNDDSSLSSP--LDTFYLSFEQEFVCKDDSQSSKHGHSAVTL 731
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +1
Query: 478 IQSVSSVSTLNNGSSPILQLSTLVGMRREYIQPTRPTHASTASNRRGLTSVPYKTRNSWT 657
+++V LN+ P+L+ M+ Y + RPT S S+ + Y + +
Sbjct: 445 VENVDEFKWLNSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHL 504
Query: 658 RSFL 669
R +L
Sbjct: 505 RFYL 508
>09_06_0055 -
20550889-20551531,20551612-20551889,20552035-20552203,
20552397-20552534,20553945-20553997,20554521-20554574,
20556062-20556295,20556399-20556986,20557065-20557419,
20557494-20557694,20557925-20557998,20558114-20558254,
20558611-20558670,20558750-20558806,20559281-20559318,
20559419-20559578
Length = 1080
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +1
Query: 478 IQSVSSVSTLNNGSSPILQLSTLVGMRREYIQPTRPTHASTASNRRGLTSVPYKTRNSWT 657
+++V LN+ P+L+ M+ Y + RPT S S+ + Y + +
Sbjct: 397 VENVDEFKWLNSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHL 456
Query: 658 RSFL 669
R +L
Sbjct: 457 RFYL 460
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 273 RIAPRGLAAEPPISVPGLLSRTTARYPNATALATK 377
R APR L PP + P LLS +AR+P A A +
Sbjct: 22 RPAPRLLGPPPPPASP-LLSSASARFPRAPCNAAR 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,603,630
Number of Sequences: 37544
Number of extensions: 491572
Number of successful extensions: 1372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -