Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18m06f
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 30 0.31
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 29 0.73
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.73
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 29 0.96
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.96
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 27 2.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.9
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.9
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 3.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 23 4.7
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 5.1
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 9.0
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 25 9.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 30.3 bits (65), Expect = 0.31
Identities = 27/108 (25%), Positives = 43/108 (39%)
Frame = +2
Query: 404 EDGKTDFPPLDERRKLSISRSGRLKQANRKRHSLSLDLYGESNQCIEKPKSREYHVQIAS 583
+D D+P ER+ L+ R NR+RH D Y ++ + S E + +
Sbjct: 187 DDDYYDYPRYSERKSLNSKRHVDNYNENRRRH---YDSYSSYDELERRRSSNESYSR--R 241
Query: 584 SDLITDKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSNVNDAGVCPE 727
S+L R + +Y H + ER + N+ V D PE
Sbjct: 242 SELPRRDYNRHDERERYSY-HRRRERSNSPSYTKNESIPVVDRDSSPE 288
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 395 GETEDGKTDFPPLDERRKLSISRSGRLKQANRKRHSLSLDLYGESNQCIEKPKSRE 562
GE +DG T ++++ K +++ G ++ RK+ LS+D G ++ + P S +
Sbjct: 2 GELQDGITQEDSIEKKSK-NVASHGEKRKVKRKKEDLSMD--GSNDGVKDSPDSND 54
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.73
Identities = 22/115 (19%), Positives = 51/115 (44%)
Frame = +2
Query: 368 EKRKHSKHDGETEDGKTDFPPLDERRKLSISRSGRLKQANRKRHSLSLDLYGESNQCIEK 547
E S E+E+ + ++E+++ S S + + S S + E + +EK
Sbjct: 135 ESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESE-EEEEVVEK 193
Query: 548 PKSREYHVQIASSDLITDKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSNVNDA 712
+ ++ +SSD + + +S DS++ +++E + ++D K+ A
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESE----SSSEDEKKRKAEPA 244
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 383 SKHDGETEDGKTDFPP 430
+KHD E+E+GK+ FPP
Sbjct: 403 AKHDKESENGKSKFPP 418
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 476 KQANRKRHSLSLDLYGESNQCIEKPKSREYHVQIASSDLITDKNQRRKSADSNNYIHTKT 655
K+ R+R+ + ++ IEKP V++ +++L + D N+Y T
Sbjct: 72 KKNKRERNDKLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPK 131
Query: 656 ER 661
++
Sbjct: 132 KK 133
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 437 ERRKLSISRSGRLKQANRKRHSLSLDLYGESNQCIEKPKSREYHVQI 577
E + +G LK+ +R +H L +YG N + P ++ V I
Sbjct: 26 ENESGQVKEAGSLKRKDRVQHELGQLVYGVLNLSFQAPMRKKLDVYI 72
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 302 SATSTVRK*KMAKFLKSFFTPSEKRKHSKHDGETEDGKTDFPPLDERRKLSISRSGRLKQ 481
SA V K +M + K + K+K S + TE+ D+R + +
Sbjct: 664 SAVLKVNKPEMKEGQKK--AEARKKKESPLEA-TEETNPWLQVPDQRTSSAKKLDKNSSK 720
Query: 482 ANRKRHSLSLDLYGESNQCIEKPK 553
A++K H L +D + +E+PK
Sbjct: 721 ADKKNHKLKMDKVASLQELVEEPK 744
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 599 DKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSN 700
D+N+ + NY + KT+++ K+ T N SN
Sbjct: 236 DRNKMMQRLWGENYFNPKTKKWSKSATDANGNSN 269
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 599 DKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSN 700
D+N+ + NY + KT+++ K+ T N SN
Sbjct: 236 DRNKMMQRLWGENYFNPKTKKWSKSATDANGNSN 269
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 359 TPSEKRKHSK--HDGETEDGKTDFPPLDERRKLSISRSGRLK 478
TP EKR K + + E K+ P +++RKL +SGR K
Sbjct: 482 TPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKL--KQSGRKK 521
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 22.6 bits (46), Expect(2) = 4.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 488 RKRHSLSLDLYGESNQCIEKPKSREYHVQIASSDLITDKNQRRKSADSNN 637
R+R + L+ + Q IE K E ++I + KNQ+ + D N
Sbjct: 776 RRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRN 825
Score = 21.8 bits (44), Expect(2) = 4.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 638 YIHTKTERFHKTKTQDNKQSNVNDAGVCPETEIDSAFEI 754
Y K ++ K Q+ + N N+ + + E+ S FE+
Sbjct: 862 YDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFEL 900
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 4 SVHCVSNGSNVVRLNYKHSYRPFSEHCVRISSVCVKVN*VMYSC 135
S H S +N+ L + PF + SVCV ++ + +SC
Sbjct: 46 STHLTSCQANISLLKIVGLHCPFHRRGIASLSVCVALHWIAFSC 89
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/49 (22%), Positives = 22/49 (44%)
Frame = +2
Query: 566 HVQIASSDLITDKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSNVNDA 712
H S++++TD AD +NY+ ++ + DN +D+
Sbjct: 498 HSSSVSANVLTDSENTPIHADGDNYVDEESRIGSSSTRNDNSTFQTSDS 546
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 630 VTTTFTLKQNVFIKRKLKITSRVM 701
V+++FTL NV KRKL +VM
Sbjct: 302 VSSSFTLAVNVIAKRKLDDEEKVM 325
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +2
Query: 293 LLKSATSTVRK*KMAKFLKSFFTPSEKRKHSKHDGETEDGKTDFPPLDERRKLSISRSGR 472
L+++ K + + +KSFF+ K +K + K+ F P D + I R
Sbjct: 721 LIRNCIKAHNKQQQRRSIKSFFSCITPNKPTKDVNDILSEKSAFSPADYEHSIDI-REHT 779
Query: 473 LKQANRKRHSLSLDLYGESNQCIEKPKS 556
AN + D Y ++ I S
Sbjct: 780 SYDANSMDNDSDEDNYEQAESIISSLSS 807
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 593 ITDKNQRRKSADSNNYIHTKTERFHKTKTQDNKQSN 700
+TDKN+ + + D N IH+ F K+ ++SN
Sbjct: 542 MTDKNKDQLATDILNLIHSSNNEFMKSIFPVAEESN 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,447
Number of Sequences: 5004
Number of extensions: 54784
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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