Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m06f
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822...    34   0.11 
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517...    33   0.25 
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    31   1.0  
01_06_1183 - 35176780-35177266,35179631-35181093                       30   2.3  
02_05_0255 - 27184306-27184914,27185009-27185272                       29   5.4  
08_01_0922 + 9092266-9093174                                           28   9.4  

>03_05_1076 +
           30180923-30181150,30181746-30181913,30182063-30182281,
           30182827-30182872,30183708-30183943,30184065-30184079,
           30185749-30186061,30186189-30186403,30186598-30186600
          Length = 480

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 371 KRKHSKHDGETEDGKTDFPPLDERRKLSISRSGRLKQANRKRHSLSLD 514
           +R+ SK+  ++E+G      ++E  +  +SRS   ++  R+RH  S D
Sbjct: 352 RRRRSKYGSDSEEGSDSGDSIEEEEEKGLSRSKHRRKHQRRRHEFSDD 399


>01_03_0280 -
           14546334-14546815,14546894-14547560,14550333-14551754,
           14552831-14553127
          Length = 955

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 548 PKSREYHVQIASSDLITDKNQRRKSADSNNYI-HTKTERFHKTKTQDNKQSNVNDAG 715
           P+ R      A++  +T++N+  ++ +S N    TKT     T   +NK++NVN+ G
Sbjct: 42  PRRRANRCPDAATPPLTNENENDRTNESENENDRTKTSENEGTNVNENKRTNVNELG 98


>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 14  VFQMVQTSFD*IINILIGRFLSIVFGFLVFALKSIKLCIRV 136
           V+Q+   +FD +  ++IG +L I+F FLV   + +   I +
Sbjct: 510 VYQVASVTFDLLFLLVIGSYLIILFSFLVITTRGLDDLINI 550


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 329 KMAKFLKSFFTPSEKRKHSKHDGETEDGKTDFPPLDERRKLSI 457
           + AK +    TP     +SK D E EDG+   PP D R  +S+
Sbjct: 242 RYAKCVLFSATPRPSDSNSKADVEAEDGEPPVPPSDFRCPISL 284


>02_05_0255 - 27184306-27184914,27185009-27185272
          Length = 290

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 467 GRLK--QANRKRHSLSLDLYGESNQCIEKPKSREYHVQIASSDLITDKNQRRKSADSNN 637
           GR K  Q   K+H   L + G     +E+PK  E+H +    + +  K  R  S+ S++
Sbjct: 32  GRKKDDQPEEKKHEEEL-VTGMEKVSVEEPKKEEHHAEGEKKESLLSKLHRSSSSSSSS 89


>08_01_0922 + 9092266-9093174
          Length = 302

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 313 YREKIKNGKISQIVLYAERKA 375
           YREK KN K  + + YA RKA
Sbjct: 198 YREKRKNRKFQKTIRYASRKA 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,118
Number of Sequences: 37544
Number of extensions: 297855
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)