Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18m06f
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.48 
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    25   1.9  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.8  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   7.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 524 ESNQCIEKPKSREYHVQIASSDLITDKNQRRKSADSNNYIHTKTERFHKTKTQ-DNKQSN 700
           E N+ +++ +    H++ +   L   + Q+R  A+ +  + T  ER H+ +++ DN +  
Sbjct: 437 EKNEALKRQEKLIDHIKTSRLGL---EEQKRIKAELSQDVGTSKERIHELQSELDNVREQ 493

Query: 701 VNDAGV 718
           + DA +
Sbjct: 494 LGDAKI 499


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 62  IGRFLSIV--FGFLVFALKSIKLCIRVKSAGYKIHLTLALINFKV 190
           IG F++ +  FGF V+  +  + C+R +SA   I +  A + F V
Sbjct: 186 IGAFITFLPLFGFGVYFDERKQTCVRYRSATEPIDVAYAYLFFAV 230


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 352 RFEKFCHFLFSHGT 311
           RF  FCH+L +H T
Sbjct: 844 RFRIFCHWLCNHST 857


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 482 ANRKRHSLS----LDLYGESNQCIEKPKSREYHVQIASSDLITDK 604
           AN   H L     +D YG   +CI + ++  Y +Q+ +++   D+
Sbjct: 28  ANENTHYLPPLECVDPYGRPQRCIPEFENAAYQLQVEATNTCGDE 72


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,549
Number of Sequences: 2352
Number of extensions: 12896
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)