Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l16r
         (569 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF583668-1|ABQ59585.1|  105|Homo sapiens immunoglobulin heavy ch...    31   2.9  
DQ100818-1|AAZ08825.1|  123|Homo sapiens immunoglobulin heavy ch...    30   6.6  
D83542-1|BAA12012.1|  814|Homo sapiens cadherin-15 protein.            29   8.7  
BC008951-1|AAH08951.1|  814|Homo sapiens cadherin 15, M-cadherin...    29   8.7  

>EF583668-1|ABQ59585.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 268 RRHNNYYRRSDYYRFNNYYYG 206
           R   NYY  S YY +N YYYG
Sbjct: 76  RASGNYYDSSGYYYWNYYYYG 96


>DQ100818-1|AAZ08825.1|  123|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 123

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 253 YYRRSDYYRFNNYYYG 206
           YY  S YYR+N YYYG
Sbjct: 97  YYDSSGYYRWNFYYYG 112


>D83542-1|BAA12012.1|  814|Homo sapiens cadherin-15 protein.
          Length = 814

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 63  EEKDFHRLSLLRFPC--SLPLGCCPLRREA 146
           E++D + +S LR P   SLPLG  PLRR+A
Sbjct: 662 EDQDAYDISQLRHPTALSLPLGPPPLRRDA 691


>BC008951-1|AAH08951.1|  814|Homo sapiens cadherin 15, M-cadherin
           (myotubule) protein.
          Length = 814

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 63  EEKDFHRLSLLRFPC--SLPLGCCPLRREA 146
           E++D + +S LR P   SLPLG  PLRR+A
Sbjct: 662 EDQDAYDISQLRHPTALSLPLGPPPLRRDA 691


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,867,046
Number of Sequences: 237096
Number of extensions: 1061934
Number of successful extensions: 2781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2781
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)