Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l13r
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    56   6e-10
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 55.6 bits (128), Expect = 6e-10
 Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
 Frame = -2

Query: 814 NGIGSHVVRIALEEGAKEINILDINEANAKSLQDELNAKHGVGKVKFIKCDVANHESLVA 635
           +GIG  ++   + +G K I I    +   K+L +EL +K G  K+  ++CD++N   ++ 
Sbjct: 17  SGIGKCLIECLVGKGMKVIGIAPQVD-KMKTLVEELKSKPG--KLVPLQCDLSNQNDILK 73

Query: 634 AFEAILSDKNNEYVVLNNAAI------LNDSLKTYRKQIDINVAAVITGSLKALDLMRXX 473
             E +  +     +++NNA I       ND +  ++K  DIN+  +     + L LM+  
Sbjct: 74  VIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMK-K 132

Query: 472 XXXXXGAIINMSSIAALCPLPFT---PIYNATKSAVMQFSVCLGADDYYSRTGVRVLTMC 302
                G I+N++  + L  LP     P Y A+K A+   + CL ++     + ++V+++ 
Sbjct: 133 KGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISIS 192

Query: 301 FGATDTSLIA 272
               +T + A
Sbjct: 193 PDLVETDMTA 202


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 803  ISCSQDCTRGRGKGN*YIGHQRSKREIASRRTER 702
            +SC+  CT    K   Y  H   K E A +  +R
Sbjct: 1709 VSCASGCTAVETKSKPYKFHCMEKNEAAMKLKKR 1742


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 286 YLSHRNT*LIHELQSSSSNRLRPNIH*TASRHS 384
           Y  H N  ++ ELQ+    RL  N     S HS
Sbjct: 100 YQEHPNGKILRELQTDYDRRLHDNSPSFLSDHS 132


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 203 GI*L*RFTEFGFYNFIETSHVLNRNKTSI 289
           G  L RFT     +F  T  + NRN TS+
Sbjct: 469 GAVLARFTHLNHADFSYTIVINNRNNTSM 497


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 299 ETHS*YTNSSPRVVIVCAQT 358
           + HS  TNS PR+++  A T
Sbjct: 276 DEHSNRTNSDPRMILTEAYT 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,562
Number of Sequences: 438
Number of extensions: 5430
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)