Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l13f
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    72   5e-15
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 72.1 bits (169), Expect = 5e-15
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 9/206 (4%)
 Frame = +3

Query: 48  MTYDWKDKVVLITGGGNGIGSHVVRIALEEGAKEINILDINEANAKSLQDELNAKHGVGK 227
           M  +W D+V L+TG  +GIG  ++   + +G K I I        K+L +EL +K   GK
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAP-QVDKMKTLVEELKSK--PGK 57

Query: 228 VKFIKCDVANHESLVAAFEAILSDKNNEYVVLNNAAI------LNDSLKTYRKQIDINVA 389
           +  ++CD++N   ++   E +  +     +++NNA I       ND +  ++K  DIN+ 
Sbjct: 58  LVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLL 117

Query: 390 AVITGSLKALDLMRXXXXXXXXAIINMSSIAALCPLPFT---PIYNATKSAVMQFSVCLG 560
            +     + L LM+         I+N++  + L  LP     P Y A+K A+   + CL 
Sbjct: 118 GLTCMIQEVLKLMK-KKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLR 176

Query: 561 ADDYYSRTGVRVLTMCFGATDTSLIA 638
           ++     + ++V+++     +T + A
Sbjct: 177 SELAQCESNIKVISISPDLVETDMTA 202


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 107  ISCSQDCTRGRGKGN*YIGHQRSKREIASRRTER 208
            +SC+  CT    K   Y  H   K E A +  +R
Sbjct: 1709 VSCASGCTAVETKSKPYKFHCMEKNEAAMKLKKR 1742


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 624 YLSHRNT*LIHELQSSSSNRLRPNIH*TASRHS 526
           Y  H N  ++ ELQ+    RL  N     S HS
Sbjct: 100 YQEHPNGKILRELQTDYDRRLHDNSPSFLSDHS 132


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 611 ETHS*YTNSSPRVVIVCAQT 552
           + HS  TNS PR+++  A T
Sbjct: 276 DEHSNRTNSDPRMILTEAYT 295


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 294 SDKNNEYVVLNNAAIL 341
           +D N EY +  N+AIL
Sbjct: 107 TDVNKEYAIRGNSAIL 122


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 249 VANHESLVAAFEAILSDKNNEYVVLNNAAILNDSLKTYRKQ 371
           ++  ES V   + + S K++ +  L N        +TY+KQ
Sbjct: 432 LSGDESDVVELQPVKSSKSSGWRKLRNIVHWTPFFQTYKKQ 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,229
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)